| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,098,711 – 14,098,821 |
| Length | 110 |
| Max. P | 0.500000 |
| Location | 14,098,711 – 14,098,821 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 81.99 |
| Mean single sequence MFE | -16.43 |
| Consensus MFE | -14.65 |
| Energy contribution | -13.77 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.89 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14098711 110 - 20766785 AUCAAAAUUGUGUUUAAUUUGUGAAUAAUAAUUCAUGACCGCAACUACUUUCAAAUAAGAAUUCAAACUUGGUGGUUAACUUAUAUGAAUAUAGGAAUGGUUACUCUGAU ((((((((((....))))))((((((....))))))(((((...(((..((((.(((((......((((....))))..))))).))))..)))...)))))....)))) ( -18.00) >DroSec_CAF1 7789 91 - 1 -------------------UCUAAAUAAUCAUUUAUGGCCGCAACUACUUUCGAAUAAGAAUUCAAACUUGGUGGUUAACUUAUAUGAAUAUAGGAAAGGUUACUCUGAU -------------------........((((....(((((..(((((((...((((....))))......)))))))..((((((....))))))...)))))...)))) ( -15.00) >DroSim_CAF1 21042 91 - 1 -------------------UCUAAAUAAUAAUUUAUGACCGCAACUACUUUCAAAUAAGUAUUCAAACUUGGUGGUUAACUUAUAUGAAUAUAGGAAAGGUUACCCUGAU -------------------................(((((....(((..((((.((((((..(((.......)))...)))))).))))..)))....)))))....... ( -16.30) >consensus ___________________UCUAAAUAAUAAUUUAUGACCGCAACUACUUUCAAAUAAGAAUUCAAACUUGGUGGUUAACUUAUAUGAAUAUAGGAAAGGUUACUCUGAU .....................(((((....)))))(((((....(((..((((.(((((......((((....))))..))))).))))..)))....)))))....... (-14.65 = -13.77 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:14 2006