Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,098,525 – 14,098,631 |
Length | 106 |
Max. P | 0.816935 |
Location | 14,098,525 – 14,098,631 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -43.38 |
Consensus MFE | -33.20 |
Energy contribution | -33.92 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.11 |
Mean z-score | -2.02 |
Structure conservation index | 0.77 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14098525 106 - 20766785 CUGUUUCUGCUCCCCAUUG--UUCACAUGUGGGGGAGUGGCGGAGCGGGAAGGUGGGGG-GAAACACUUUCACCGCUUACCGAAGAGCGGGGCUUCCACUGCAGUCAAU ((((((((((((((((((.--(((.(....)))).))))).))))))))).((((((((-(((.....))).((((((......))))))..))))))))))))..... ( -45.80) >DroSec_CAF1 7604 105 - 1 CUGUUACUGCUCCCUAUUG--UUCACAUGUGGGGGAGUGGUGGAUCGGGGAGUUG-GGG-GAAACACUUUCACCGCUUACCGAAGAGCGGGGCUUCCACUGCAGUCAAU (((((((..((((((..((--....))....))))))..))).....((((((((-..(-(.....))..).((((((......)))))))))))))...))))..... ( -40.70) >DroSim_CAF1 20857 105 - 1 CUGUUUCUGCUCCCCAUUG--UUCACAUGUGGGGGAGUGGUGGAUCGGGGAGUUG-GGG-GAAACACUUUCACCGCUUACCGAAGAGCGGGGCUUCCACUGCAGUCAAU ((((..(..((((((..((--....))....))))))..).......((((((((-..(-(.....))..).((((((......)))))))))))))...))))..... ( -39.60) >DroEre_CAF1 2838 103 - 1 CUGUUUCUGGUCCCCAUUG--UUCACAUGUGGGGGAGUGGUGGGGCGGGGAGGUG-GG---AUACACUUUCACCGCUUACCGAAGAGCGGGGCUUCCACUGCAGUCAAU ..........(((((((((--....)).))))))).(..(((((((..(((((((-..---...))))))).((((((......)))))).)).)))))..)....... ( -42.50) >DroYak_CAF1 18139 108 - 1 CUGUUUCUGGUCCCCAUUGUGUUCACAUGUGGGGGAGUGGUGGAGCGGGGCGGUG-GGGGAAAACACUUUCACCGCUUACCGAAGAGCGGGGCUUCCACUGCAUUCAAU ..........((((((((((....))).))))))).(..(((((((.((((((((-..((......))..)))))))).(((.....))).)).)))))..)....... ( -48.30) >consensus CUGUUUCUGCUCCCCAUUG__UUCACAUGUGGGGGAGUGGUGGAGCGGGGAGGUG_GGG_GAAACACUUUCACCGCUUACCGAAGAGCGGGGCUUCCACUGCAGUCAAU ..........(((((((...........))))))).(..(((((((..(((((((.........))))))).((((((......)))))).)).)))))..)....... (-33.20 = -33.92 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:13 2006