Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,090,392 – 14,090,482 |
Length | 90 |
Max. P | 0.969292 |
Location | 14,090,392 – 14,090,482 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 76.49 |
Mean single sequence MFE | -26.57 |
Consensus MFE | -11.55 |
Energy contribution | -11.99 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.32 |
Mean z-score | -2.72 |
Structure conservation index | 0.43 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969292 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14090392 90 - 20766785 -----AGAAGCCCCAAAGUGAA---CGGAUUGGUG-GACGCGAAAGCGACG-CAAGAUAAUGGCCAGUGGAUUUAGAAUGGCGAACAA--------AAGAAGUUCAA--C -----....(((((........---.))((((((.-(.(((....))).(.-...)....).))))))...........)))((((..--------.....))))..--. ( -22.80) >DroSec_CAF1 5590 93 - 1 -----AGAAGCCCCAAAGUGAA---CGGAUUGGGGCGACGCGAAAGCGG-G-CAAGAUAAUGGCCAGUGGAUUUAGAAUGGCGAACAAAAA-----AAGAAGUUCAA--C -----....(((((((.(....---)...)))))))..(((....))).-.-..........((((............))))((((.....-----.....))))..--. ( -28.30) >DroSim_CAF1 16309 91 - 1 -----AGAAGCCCCAAAGUGAA---CGGAUUGGGGCGACGCGAAAGCGGGG-CAAGAUAAUGGCCAGUGGAUUUAGAAUGGCGAACAA--------AAGAAGUUCAA--C -----....(((((((.(....---)...)))))))..(((....)))((.-((......)).))..(((((((....((.....)).--------...))))))).--. ( -29.60) >DroEre_CAF1 825 90 - 1 -----AGAAGCCCCAAAGUGAA---CGGAUUGGGG-GACGCGAAAGCGACGCCCAGAUAAUGGC-AUUGGACUUAGAAUGGCGAACAA--------AAGAAGUUCAA--C -----.....((((((.(....---)...))))))-..(((....)))..(((........)))-.((((((((....((.....)).--------...))))))))--. ( -28.40) >DroYak_CAF1 16071 97 - 1 ACCAAAGAAGCCCCAAAGUGAA---CGGAUUGGGG-GUU-UGGGGGCGACGCCAAGAUAAUGGCCAGUGGAUUUAGAAUGGCGAACAA--------AAGAAGUUCAAUGC .((...(((.((((((.(....---)...))))))-.))-)..))(((..((((...(((...((...))..)))...))))((((..--------.....))))..))) ( -26.90) >DroPer_CAF1 7090 94 - 1 -----AUUGAGCCCAAAAUGAAGCUCGGGUUCGGGAGCUGCCAGAGAA-----CCGAUUAUGGAUA--GGA--UAGAAUGGCAGAUAAAGACGGGCGGGAAGUUCAA--U -----(((((((((........(((((...((.....((((((.....-----((...........--)).--.....)))))).....))))))).))..))))))--) ( -23.40) >consensus _____AGAAGCCCCAAAGUGAA___CGGAUUGGGG_GACGCGAAAGCGACG_CAAGAUAAUGGCCAGUGGAUUUAGAAUGGCGAACAA________AAGAAGUUCAA__C ..........((((((..((.....))..))))))...(((....)))..............((((............))))((((...............))))..... (-11.55 = -11.99 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:12 2006