Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,088,610 – 14,088,725 |
Length | 115 |
Max. P | 0.903810 |
Location | 14,088,610 – 14,088,725 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 92.06 |
Mean single sequence MFE | -33.37 |
Consensus MFE | -24.79 |
Energy contribution | -24.13 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.10 |
Mean z-score | -3.95 |
Structure conservation index | 0.74 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827822 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14088610 115 + 20766785 UUUUUUUCUCUCUUUUUUUUGUAGUUGGAGGGGGGAGGAGUAGGUAGGCUUUGUAUAUUUUGUUGUUGCCUUUACCGCUUGAUUAAUUUUUGGUGCGUUUGGCAACAGCGAAAAA (((((..((((((..((.....))..))))))..)))))..................(((((((((((((...((((((.((......)).)))).))..))))))))))))).. ( -36.30) >DroSec_CAF1 3806 108 + 1 UUUUUUUUU-UC-UCUUUUUUUGGUAGGUGGGGGGAGG----GGUAGGCUUUGUAUAUUUUGUUGUUGCCUUUACCGCUUGAUUAAUU-UUGGUGCGUUUGGCAACAGCGAAAAA .......(.-.(-(((((((.........)))))))).----.).............(((((((((((((...((((((.((.....)-).)))).))..))))))))))))).. ( -30.20) >DroSim_CAF1 13476 110 + 1 UUUUUUUCUAUCUUUUUUUUUUGGUAGGUGGGGGGAGG----GGUAGGCUUUGUAUAUUUUGUUGUUGCCUUUACCGCUUGAUUAAUU-UUGGUGCGUUUGGCAACAGCGAAAAA ......(((((((((((((((........)))))))))----)))))).........(((((((((((((...((((((.((.....)-).)))).))..))))))))))))).. ( -33.60) >consensus UUUUUUUCU_UCUUUUUUUUUUGGUAGGUGGGGGGAGG____GGUAGGCUUUGUAUAUUUUGUUGUUGCCUUUACCGCUUGAUUAAUU_UUGGUGCGUUUGGCAACAGCGAAAAA .((((..((.((..((......))..)).))..))))....................(((((((((((((...((((((............)))).))..))))))))))))).. (-24.79 = -24.13 + -0.66)
Location | 14,088,610 – 14,088,725 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 92.06 |
Mean single sequence MFE | -14.92 |
Consensus MFE | -12.99 |
Energy contribution | -12.99 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.58 |
Structure conservation index | 0.87 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14088610 115 - 20766785 UUUUUCGCUGUUGCCAAACGCACCAAAAAUUAAUCAAGCGGUAAAGGCAACAACAAAAUAUACAAAGCCUACCUACUCCUCCCCCCUCCAACUACAAAAAAAAGAGAGAAAAAAA (((((((.(((((((...(((................))).....))))))).)...............................(((...............))).)))))).. ( -16.55) >DroSec_CAF1 3806 108 - 1 UUUUUCGCUGUUGCCAAACGCACCAA-AAUUAAUCAAGCGGUAAAGGCAACAACAAAAUAUACAAAGCCUACC----CCUCCCCCCACCUACCAAAAAAAGA-GA-AAAAAAAAA (((((((.(((((((...(((.....-..........))).....))))))).)...................----...........((.........)).-))-))))..... ( -14.26) >DroSim_CAF1 13476 110 - 1 UUUUUCGCUGUUGCCAAACGCACCAA-AAUUAAUCAAGCGGUAAAGGCAACAACAAAAUAUACAAAGCCUACC----CCUCCCCCCACCUACCAAAAAAAAAAGAUAGAAAAAAA (((((((.(((((((...(((.....-..........))).....))))))).)...................----...........((............))...)))))).. ( -13.96) >consensus UUUUUCGCUGUUGCCAAACGCACCAA_AAUUAAUCAAGCGGUAAAGGCAACAACAAAAUAUACAAAGCCUACC____CCUCCCCCCACCUACCAAAAAAAAAAGA_AGAAAAAAA ......(.(((((((...(((................))).....))))))).)............................................................. (-12.99 = -12.99 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:11 2006