Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,085,482 – 14,085,590 |
Length | 108 |
Max. P | 0.933135 |
Location | 14,085,482 – 14,085,590 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.90 |
Mean single sequence MFE | -20.95 |
Consensus MFE | -11.93 |
Energy contribution | -12.92 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.43 |
Structure conservation index | 0.57 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14085482 108 - 20766785 UAAAUUACCAUAAAUUAAUAUUAUGCCCAGGCAUUUAAUUAGGGAUCCAGACACAGGGGAUAA------CAGAAAG-GGAAUGCCAAAAAAAAAAAAAAAGGAAAGGGG-----GAAACG .......((((((.......)))).....(((((((..((.(..((((.........))))..------)...)).-.)))))))....................)).(-----....). ( -15.80) >DroSec_CAF1 725 98 - 1 UAAAUUACCAUAAAUUAAUAUUAUGCCCAGGCAUUUAAUUAGGUAUCCAGACACAGGGGAUAC------CAGAAAG-CGAAUGCCAAAA----------AAGAAAUGGG-----GAAACG ........(((((.......)))))(((.(((((((..((.(((((((.........))))))------)...)).-.)))))))....----------.(....))))-----...... ( -22.30) >DroSim_CAF1 10400 83 - 1 UAAAUUACCAUAAAUUAAUAUUAUGCCCAGGCAUUUAAUUAGGUAUCCAGACACAGGGGAUAC------CA----------------AA----------AAGAAAUGGG-----GAAACG .......((((....((((...((((....))))...))))(((((((.........))))))------).----------------..----------.....))))(-----....). ( -21.20) >DroYak_CAF1 11114 109 - 1 UAAAUUACCAUAAAUUAAUAUUAUGCCCAGGCAUUUAAUUAGGCAUCCAGACACAGUGGAUACUCGUAACAGAGAGGGGAAUGCCAA-A----------AAGAAAUGGGGGGCAGAAACU .......................(((((.(((((((..((....(((((.......))))).(((......)))))..)))))))..-.----------.(....)...)))))...... ( -24.50) >consensus UAAAUUACCAUAAAUUAAUAUUAUGCCCAGGCAUUUAAUUAGGUAUCCAGACACAGGGGAUAC______CAGAAAG_GGAAUGCCAAAA__________AAGAAAUGGG_____GAAACG .......((((...(((((...((((....))))...)))))((((((.........)))))).........................................))))............ (-11.93 = -12.92 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:06 2006