| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,085,050 – 14,085,143 |
| Length | 93 |
| Max. P | 0.824223 |
| Location | 14,085,050 – 14,085,143 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 91.10 |
| Mean single sequence MFE | -36.42 |
| Consensus MFE | -27.54 |
| Energy contribution | -28.22 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.824223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14085050 93 - 20766785 UCGAAUGUGUGGCAAUGCCGGACUCCCAUUGAGAGACUGGCCC--CGUUUUGCGGAGGUGGAC--ACUCCGUGGAG-CCACUAAUUAGUCACAAUUUC ..(((..((((((...(((((.(((.......))).)))))..--.((((..(((((......--.)))))..)))-).........))))))..))) ( -35.00) >DroSec_CAF1 286 93 - 1 UCGAAUGUGUGGCAAUGCCGGACUCCCAUUGAGGGACUGGCCC--CGUUUUGCGGAGGUGGAC--ACUCCACGGAG-CCACUAAUUAGUCACAAUUUC ..(((..((((((...(((((..((((.....)))))))))..--.((((((.((((......--.)))).)))))-).........))))))..))) ( -33.80) >DroSim_CAF1 9958 93 - 1 UCGAAUGUGUGGCAAUGCCGGACUCCCAUUGAGGGACUGGCCC--CGUUUUGCGGAGGUGGAC--ACUCCGUGGAG-CCACUAAUUAGUCACAAUUUC ..(((..((((((...(((((..((((.....)))))))))..--.((((..(((((......--.)))))..)))-).........))))))..))) ( -37.80) >DroYak_CAF1 10676 98 - 1 GCGAGUGUGUGGCAAUGCCAGGCGCCCAUUGAGGCACUGGCUCCACAUUUUGCGGAGGUGGACACACUCCGUGGCGUCCACUAAUUAGUCACAAUUUC (((((.((((((....(((((..(((......))).))))).)))))))))))((((((....)).))))(((((............)))))...... ( -39.10) >consensus UCGAAUGUGUGGCAAUGCCGGACUCCCAUUGAGGGACUGGCCC__CGUUUUGCGGAGGUGGAC__ACUCCGUGGAG_CCACUAAUUAGUCACAAUUUC ..(((..((((((...(((((..((((.....)))))))))......((((((((((.........))))))))))...........))))))..))) (-27.54 = -28.22 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:05 2006