Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,084,002 – 14,084,115 |
Length | 113 |
Max. P | 0.990099 |
Location | 14,084,002 – 14,084,115 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.94 |
Mean single sequence MFE | -26.63 |
Consensus MFE | -15.55 |
Energy contribution | -16.33 |
Covariance contribution | 0.79 |
Combinations/Pair | 1.18 |
Mean z-score | -1.66 |
Structure conservation index | 0.58 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671573 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14084002 113 + 20766785 CCUGCUUAAGUA---ACCACUUUCAGCGGUUUGGCAAUAAAGCGAAUUUUUAUUGC----UAUUUGCAGGAGGAAAUCUAAAUUUCGUUUUCAAGAUUUUCUACUGAGUGGUCCUAAGUC ...(((((.(..---(((((((...((((..(((((((((((.....)))))))))----)).))))((.((((((((((((......)))..))))))))).)))))))))).))))). ( -31.50) >DroSim_CAF1 8985 113 + 1 CCUGCUUAAGUA---ACCACUUUCAGCGGUUUGGCAGUAAAGUGAAUUUUUAUUGC----UAUUUGUAGGAGAAAAUCUAAAUUUCGUUUUCCAGAUUUUCCCCUGAGCGAUCCUAAGUC .(((((.((((.---...))))..)))))..(((((((((((.....)))))))))----)).(((((((.(((((((((((......)))..)))))))).)))..))))......... ( -27.90) >DroYak_CAF1 9623 119 + 1 CCUUCUGCAGUAGUUACUACUUUCAGCGGUUAAGUAAUAAAGUUCGUUUUUAUUGCAUUUUAUUUGUCCGAGAAAAUGGAAUUUG-UAAUUUUAGAUUUUCCCUUAAGCGCUUUAGUUUC ........(((((...)))))...((((.(((((((((((((.....))))))))).............(((((..((((((...-..))))))..)))))..)))).))))........ ( -20.50) >consensus CCUGCUUAAGUA___ACCACUUUCAGCGGUUUGGCAAUAAAGUGAAUUUUUAUUGC____UAUUUGUAGGAGAAAAUCUAAAUUUCGUUUUCAAGAUUUUCCCCUGAGCGAUCCUAAGUC .(((((.((((.......))))..)))))....(((((((((.....)))))))))..........((((.(((((((((((......)))..)))))))).)))).............. (-15.55 = -16.33 + 0.79)
Location | 14,084,002 – 14,084,115 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.94 |
Mean single sequence MFE | -24.77 |
Consensus MFE | -15.77 |
Energy contribution | -19.67 |
Covariance contribution | 3.90 |
Combinations/Pair | 1.17 |
Mean z-score | -2.05 |
Structure conservation index | 0.64 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14084002 113 - 20766785 GACUUAGGACCACUCAGUAGAAAAUCUUGAAAACGAAAUUUAGAUUUCCUCCUGCAAAUA----GCAAUAAAAAUUCGCUUUAUUGCCAAACCGCUGAAAGUGGU---UACUUAAGCAGG .(((.((.....)).)))((.((((((.((........)).)))))).))(((((.....----((((((((.......))))))))..((((((.....)))))---)......))))) ( -26.00) >DroSim_CAF1 8985 113 - 1 GACUUAGGAUCGCUCAGGGGAAAAUCUGGAAAACGAAAUUUAGAUUUUCUCCUACAAAUA----GCAAUAAAAAUUCACUUUACUGCCAAACCGCUGAAAGUGGU---UACUUAAGCAGG (.((((((.......(((((((((((((((........))))))))))))))).......----(((.((((.......)))).)))..((((((.....)))))---).)))))))... ( -32.00) >DroYak_CAF1 9623 119 - 1 GAAACUAAAGCGCUUAAGGGAAAAUCUAAAAUUA-CAAAUUCCAUUUUCUCGGACAAAUAAAAUGCAAUAAAAACGAACUUUAUUACUUAACCGCUGAAAGUAGUAACUACUGCAGAAGG ........((((.(((((................-.....(((........)))............((((((.......)))))).))))).))))....(((((....)))))...... ( -16.30) >consensus GACUUAGGACCGCUCAGGGGAAAAUCUAGAAAACGAAAUUUAGAUUUUCUCCUACAAAUA____GCAAUAAAAAUUCACUUUAUUGCCAAACCGCUGAAAGUGGU___UACUUAAGCAGG ..((((((......((((((((((((((((........))))))))))))))))..........((((((((.......))))))))...(((((.....))))).....)))))).... (-15.77 = -19.67 + 3.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:04 2006