Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,496,146 – 2,496,256 |
Length | 110 |
Max. P | 0.952252 |
Location | 2,496,146 – 2,496,256 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 92.06 |
Mean single sequence MFE | -24.26 |
Consensus MFE | -22.14 |
Energy contribution | -22.18 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.53 |
Structure conservation index | 0.91 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952252 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2496146 110 - 20766785 CUUCUUAGUUUUCAAACGUGACUGCACCGAAUCAACACAUACAUAAACACUGGCCACAGACUGUACUGUUUGUAUACCCUUUCCCGAGGGGAACCUGUGCAGAACGACAA ................(((..((((((.(..((...(((.(((...((((((....)))..)))..))).)))...(((((....)))))))..).)))))).))).... ( -25.80) >DroSec_CAF1 7605 110 - 1 CUUCUUAGUUUUCAAACGUCACUGCACCGAAUUAACACACACAUAAACACUGCCCACAGACUGUACUGUUUGUAUACCUUUUCCCGAGGGGAACCUGUGCAGAACGACAA .................(((.((((((.(..........................((((((......))))))......(((((....))))).).))))))...))).. ( -22.20) >DroSim_CAF1 7588 110 - 1 CUUCUUAGUUUUCAAACGUCACUGCACCGAAUCAACGCACACAUAAACACUGCCCACAGACUGUACUGUUUGUAUACCCUUUCCCGAGGGGAACCUGUGCAGAACGACAA .................(((.((((((.(..((......................((((((......))))))...(((((....)))))))..).))))))...))).. ( -24.90) >DroEre_CAF1 7695 106 - 1 CUUUUUAGUUCUCAAACGUCACUGCACUGAAACAA----CACAUAAACACUGCCCACAGACUGUACUGUUUGUAUACCCUUUCCCGAGGGGAACCUGUGCAGAACGACAA .................(((.((((((........----................((((((......))))))...(((((....)))))......))))))...))).. ( -24.20) >DroYak_CAF1 7650 103 - 1 CUUCUUGGUUUUCAAACGGCACUGCACAUAA---A----CACAUAAACACUGCCCACAGACUGUACUGUUUGUAUACCCUUUCCCGAGGGGAACCUGUGCAGAACGACAA ................((...(((((((...---.----................((((((......))))))...(((((....))))).....)))))))..)).... ( -24.20) >consensus CUUCUUAGUUUUCAAACGUCACUGCACCGAAUCAAC_CACACAUAAACACUGCCCACAGACUGUACUGUUUGUAUACCCUUUCCCGAGGGGAACCUGUGCAGAACGACAA ................(((..((((((............................((((((......))))))...(((((....)))))......)))))).))).... (-22.14 = -22.18 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:23 2006