Locus 4279

Sequence ID 2R_DroMel_CAF1
Location 14,083,499 – 14,083,600
Length 101
Max. P 0.515052
window6867

overview

Window 7

Location 14,083,499 – 14,083,600
Length 101
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.60
Mean single sequence MFE -29.45
Consensus MFE -16.06
Energy contribution -16.42
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.73
Structure conservation index 0.55
SVM decision value -0.04
SVM RNA-class probability 0.515052
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14083499 101 - 20766785
-----UCAGGCAUUUAGCUAUUUGAACAUUCUCAGCC------UGGCC--AGGCAGUAAUUAAAAUAAAUUGCCUGCCCAGCGCAGACUCGGCCACAUCUAGUGUCGGCC------AUCU
-----((((((.....)))...))).........(((------(((.(--(((((((...........)))))))).)))).))......((((((((...)))).))))------.... ( -32.60)
>DroPse_CAF1 498 108 - 1
CUUAGUCAGGCAU----CCAUUGAAGCCAUCGAAGCCUCCAGUCGGCC--AGGCAGUAAUUAAAAUAAAUUGCUUUCGAAGCGCAGUCCCAGCCACAUCUAGUGUUGGCC------AUCU
........(((..----........(((.(((((((((((....))..--))))(((((((......)))))))))))).).)).....((((.((.....)))))))))------.... ( -26.70)
>DroSim_CAF1 8492 101 - 1
-----UCAGGCAUUUAGCCAUUUGAACAUUCUCAGCC------CGGCC--AGGCAGUAAUUAAAAUAAAUUGCCUGCCCAGCGCAGACUCGGCCACAUCUAGUGUCGGCC------AUCU
-----...(((.....)))..........(((..((.------.(((.--(((((((...........))))))))))..))..)))...((((((((...)))).))))------.... ( -30.80)
>DroYak_CAF1 9093 103 - 1
-----UCAGCCAA-----C-AUUGAACAUUCUCAGCC------CGGCGAGAGGCAGUAAUUAAAAUAAAUUGCCUGCCCAGCGCAGUCUUGGCCACAUCUAGUGUUGGCCAUCGCCAUCU
-----...(((((-----(-((((.......((((..------(.(((...((((((((((......))))).)))))...))).)..)))).......))))))))))........... ( -30.44)
>DroPer_CAF1 533 108 - 1
CUUAGUCAGGCAU----CCAUUGAAGCCAUCGAAGCCUCCAGUCGGCC--AGGCAGUAAUUAAAAUAAAUUGCUUUCGAAGCGCAGUCCCAGCCACAUCUAGUGUUGGCC------AUCU
........(((..----........(((.(((((((((((....))..--))))(((((((......)))))))))))).).)).....((((.((.....)))))))))------.... ( -26.70)
>consensus
_____UCAGGCAU____CCAUUUGAACAUUCUCAGCC______CGGCC__AGGCAGUAAUUAAAAUAAAUUGCCUGCCCAGCGCAGUCUCGGCCACAUCUAGUGUUGGCC______AUCU
.........((.......................(((.......)))...(((((((...........))))))).......))......((((((((...)))).)))).......... (-16.06 = -16.42 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:00 2006