| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,082,712 – 14,082,832 |
| Length | 120 |
| Max. P | 0.704757 |
| Location | 14,082,712 – 14,082,832 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.33 |
| Mean single sequence MFE | -46.53 |
| Consensus MFE | -44.37 |
| Energy contribution | -44.27 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14082712 120 - 20766785 AGUGGAGCAGCAGCUCCAAAUGGGGGAUAGCAUCGCAUUCCGCGGAUGCGGCCUUGCUAAAUAGGGGCAUCUAUUGGCAAUCCUCGGGGACGGCUGGGAGUGCAAUUUUCUCUUGAUCGG ..((((((....))))))...((((((....((.(((((((((....))(((((((((((.((((....)))))))))))(((....))).)))).))))))).))..))))))...... ( -42.70) >DroSim_CAF1 7690 120 - 1 AGUGGAGCAGCAGCUCCAAAUGGGGGAUGGCAUCGCAUUCCGCGGAUGCGGCCUUGCUAAAUAGGGGCAUCUAUUGGCCAUCCUCGGGGACGGCUGAGAGUGCAAUUUUCUCUUGAUCGG ..((((((....))))))....(((((((((..((((((.....))))))(((((........)))))........))))))))).....(((..(((((.........)))))..))). ( -49.40) >DroYak_CAF1 8270 116 - 1 AGUGGAGCAGCAGCUCCAAAUGGGGGAUGGCAGCGCAUUCCGCGGAUGCGGCCUUACUAAAUAGGGGCAUCUAUUGGCCAUCCUCGGGCACGACUGGGAGUGCAAUUUUCUCUCGA---- ..((((((....))))))....(((((((((..((((((.....))))))(((((........)))))........)))))))))..((((........)))).............---- ( -47.50) >consensus AGUGGAGCAGCAGCUCCAAAUGGGGGAUGGCAUCGCAUUCCGCGGAUGCGGCCUUGCUAAAUAGGGGCAUCUAUUGGCCAUCCUCGGGGACGGCUGGGAGUGCAAUUUUCUCUUGAUCGG ..((((((....))))))....(((((((((..((((((.....))))))(((((........)))))........)))))))))(....)....(((((.........)))))...... (-44.37 = -44.27 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:56 2006