Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,081,850 – 14,081,969 |
Length | 119 |
Max. P | 0.661880 |
Location | 14,081,850 – 14,081,969 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.76 |
Mean single sequence MFE | -41.47 |
Consensus MFE | -35.99 |
Energy contribution | -37.77 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.03 |
Mean z-score | -1.99 |
Structure conservation index | 0.87 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14081850 119 + 20766785 GCCGAAAGCCAAUGAGCUAAAAGUGGCCAGGAAAUGUCAGUCAGGGCUUA-GGCUUUUUGCCGCUGCUCUGCUGAUUGAUUAAUGUGGAGCACGAUUGCAUAAGGGAUUGCAGUCGCGCU ((((..(((......))).....))))((..((..(((((.((((((...-(((.....)))...)))))))))))...))..))...(((.((((((((........)))))))).))) ( -43.80) >DroSim_CAF1 6394 119 + 1 GCCGAAAGCCAAUGAGCCAAAAGCGGCCAGGAAAUGUCAGUCAGGGCUUA-GGCUUUUUGCCGCUGCUCUGCUGAUUGAUUAAUGUGGAGCACGAUUGCAUAAGGGAUUGCAGUCGCGCU ..(....)(((.((.(((......)))))......(((((.((((((...-(((.....)))...))))))))))).........)))(((.((((((((........)))))))).))) ( -45.10) >DroYak_CAF1 7452 113 + 1 GACGCAAGCCAAUGAGCUGAAAGCGGCCAGGAAAUGUCAGUCAGGGCUUAAGGCUUUUUGCCGCUGCUCUGCUGAUUGAUUAAUGUGGAGCACGAUUGCAUAAGGGAUUGCAG------- ...((((.((..((.((.....((..(((.(....(((((.((((((....(((.....)))...))))))))))).......).))).))......)).))..)).))))..------- ( -35.50) >consensus GCCGAAAGCCAAUGAGCUAAAAGCGGCCAGGAAAUGUCAGUCAGGGCUUA_GGCUUUUUGCCGCUGCUCUGCUGAUUGAUUAAUGUGGAGCACGAUUGCAUAAGGGAUUGCAGUCGCGCU ..(....)(((.((.(((......)))))......(((((.((((((....(((.....)))...))))))))))).........)))(((.((((((((........)))))))).))) (-35.99 = -37.77 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:55 2006