Locus 4275

Sequence ID 2R_DroMel_CAF1
Location 14,081,412 – 14,081,530
Length 118
Max. P 0.541883
window6861

overview

Window 1

Location 14,081,412 – 14,081,530
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.02
Mean single sequence MFE -30.30
Consensus MFE -27.27
Energy contribution -27.93
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.90
SVM decision value 0.02
SVM RNA-class probability 0.541883
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14081412 118 - 20766785
CUUUAGGUGAAUGCCCUGCACUUUUUCGCGAGAUUAGUUUUUGCAGUCGAUGCGGCUAUAUUUAGUGGGCAAAU--UUUUGUUCACACAUUUAUGCAUUUUUCGCUCAGUUGCCAUUCAU
......(((((((..(((((((...((....))..)))....)))).....((((((.......((((((((..--..))))))))........((.......))..))))))))))))) ( -29.10)
>DroSim_CAF1 5959 117 - 1
CUUAAGGUGAAUGCCCUGCACUUUUUCGCGAGAUUAGUUUUUGCAGUCGAUGCGGCUAUAUUUAGUGGGCAAAA--U-UUGUUCACACAUUUAUGCAUUUUUCGCUAAGUUGCCAUUCAU
......(((((((..(((((((...((....))..)))....)))).....((((((.......(((((((...--.-.)))))))........((.......))..))))))))))))) ( -28.20)
>DroYak_CAF1 6975 119 - 1
CUUAAGGUGAAUGCCCUCGACAUUUUCGCGAGAUUAGUU-UUGCAGUCGAUGCGGCUAUAUUUAGUGGGCAAAGAAAUUUGUUCACACAUUUAUGCAUUUUUCGCGCAGUUGCCAUUCAU
.....((..(.(((....((.....))((((((......-.((((((((...))))).......(((((((((....)))))))))........)))..))))))))).)..))...... ( -33.60)
>consensus
CUUAAGGUGAAUGCCCUGCACUUUUUCGCGAGAUUAGUUUUUGCAGUCGAUGCGGCUAUAUUUAGUGGGCAAAA__UUUUGUUCACACAUUUAUGCAUUUUUCGCUCAGUUGCCAUUCAU
......(((((((..............((((((.....)))))).......((((((.......(((((((((....)))))))))........((.......))..))))))))))))) (-27.27 = -27.93 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:54 2006