Locus 4274

Sequence ID 2R_DroMel_CAF1
Location 14,081,214 – 14,081,333
Length 119
Max. P 0.527709
window6860

overview

Window 0

Location 14,081,214 – 14,081,333
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.54
Mean single sequence MFE -49.67
Consensus MFE -41.85
Energy contribution -42.63
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -2.01
Structure conservation index 0.84
SVM decision value -0.01
SVM RNA-class probability 0.527709
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14081214 119 + 20766785
GUGGAGCAGCCGGAGCUGUUGCACUUUGCACUUCAGCCCAAGGAGGCGGGUCUGAGGUGCAGCCCGACGUGUUUUUGAGGAACUUCCCUUCGGCGGA-AGGCAUCUCGUGCAUUUUCAAU
(((.((((((....)))))).))).((((((((((((((........))).)))))))))))...((.((((...(((((..((((((....).)))-))...))))).))))..))... ( -51.50)
>DroSim_CAF1 5761 119 + 1
GUGGAGCAGCCGGAGCUGUUGCACUUUGCACUUCAGCCCAAGGAGGCGGGUCUGAGGUGCAGCCCGACGUGUUUUUGAGGAACUUCCCUUCGGCCGA-UGGCAUCUCGUGCAUUUUCAAU
(((.((((((....)))))).)))..(((((((((((((........))).))))))))))((.(((.((((..(((.((.....))(....).)))-..)))).))).))......... ( -47.70)
>DroYak_CAF1 6775 120 + 1
GUGGAGCAGCCGGAGCUGUUGCACUUUGCACUUCAGCCCAAGGAGGCGGAGUUGAGGUGCAGGCCGACGUGUUUUUGAGGAACUUCCCUUCGGCGGCCAGGCAUCUCGUGCAUUUUCAAU
(((.((((((....)))))).)))..((((((((.(((......))).)))..(((((((.(((((.((.......((((......)))))).)))))..))))))))))))........ ( -49.81)
>consensus
GUGGAGCAGCCGGAGCUGUUGCACUUUGCACUUCAGCCCAAGGAGGCGGGUCUGAGGUGCAGCCCGACGUGUUUUUGAGGAACUUCCCUUCGGCGGA_AGGCAUCUCGUGCAUUUUCAAU
(((.((((((....)))))).)))..(((((((((((((........))).))))))))))((.(((.((((((((((((.......)))))).....)))))).))).))......... (-41.85 = -42.63 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:53 2006