Locus 4273

Sequence ID 2R_DroMel_CAF1
Location 14,080,693 – 14,080,807
Length 114
Max. P 0.598644
window6859

overview

Window 9

Location 14,080,693 – 14,080,807
Length 114
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.05
Mean single sequence MFE -44.81
Consensus MFE -37.79
Energy contribution -37.79
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.15
Structure conservation index 0.84
SVM decision value 0.13
SVM RNA-class probability 0.598644
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14080693 114 + 20766785
AGGCGGCCAAGAGCGGCCUGGCAUAUUAGUUUUCCACGGAGCGAGUGGCAAAACGUGCUAAAUUCCAUGGGGCAGACG--UCCAUUAAAGAGCCGC----GGCCUGGCCGAAACAUGCCA
.((((((((.(.((((((((((((....(((((((((.......)))).))))))))))..........((((....)--))).....)).)))))----..).))))).......))). ( -42.21)
>DroSim_CAF1 5238 114 + 1
AGGCGGCCAAGAGCGGCCUGGCAUAUUAGUUUUCCACGGAGCGAGUGGCAAAACGUGCUAAAUUCCAUGGGGCAGACG--UCCAUUAAAGAGCCGC----GGCCUGGCCGAAACAUGCCA
.((((((((.(.((((((((((((....(((((((((.......)))).))))))))))..........((((....)--))).....)).)))))----..).))))).......))). ( -42.21)
>DroYak_CAF1 5946 120 + 1
AGGCGGCCAAGAGCGGCCUGGCAUAUUAGUUUUCCACGGAGCGAGUGGCAAAACGUGCUAAAUUCCAUGGGGCAGACGUGUCCAUUAAAGAGCCGCUUGCUGCCUGGCCGAAACAUGCCA
((((.((.....)).))))(((((....((((((((.((((((((((((....((((........))))(((((....)))))........)))))))))).)))))..)))))))))). ( -50.00)
>consensus
AGGCGGCCAAGAGCGGCCUGGCAUAUUAGUUUUCCACGGAGCGAGUGGCAAAACGUGCUAAAUUCCAUGGGGCAGACG__UCCAUUAAAGAGCCGC____GGCCUGGCCGAAACAUGCCA
.((((........(((((.(((...........(((.((((....(((((.....)))))..)))).)))(((..................))).......))).))))).....)))). (-37.79 = -37.79 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:52 2006