Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,080,239 – 14,080,358 |
Length | 119 |
Max. P | 0.807593 |
Location | 14,080,239 – 14,080,358 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.54 |
Mean single sequence MFE | -35.11 |
Consensus MFE | -30.26 |
Energy contribution | -30.71 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.45 |
Structure conservation index | 0.86 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14080239 119 - 20766785 UCCAGC-ACGGGCUAAAAAUAACAACCAAAUCCAUUGCCCUCCGUGAGGGAGGCGCAUCUGCAGGAAUUUUUAUGCUUAUGCGUCUGUGAGAUUCGCUCAAUUUCAAAAGAAUUUCCAGC ....((-(..((((((((((..(.............(((..((....))..)))((....)).)..))))))).)))..)))..(((.(((((((..............)))))))))). ( -37.34) >DroSim_CAF1 4799 119 - 1 UCCAGC-ACGGGCUAAAAAUAACAACCAAAUCCAUUGCCCUCCGUGAGGGAGGCGCAUCUGCAGGAAUUUUUAUGCUUAUGCGUCUGCGAGAUUCGCUCAAUUUCAAAAGAAUUUCCAGC ....((-(..((((((((((..(.............(((..((....))..)))((....)).)..))))))).)))..)))..(((.(((((((..............)))))))))). ( -37.34) >DroYak_CAF1 5477 120 - 1 UCCAGCCAGGAGCUAAAAAUAACACACAAAUCCAUUGCCCUCCGUGAGGGAGGCGCAUCUUAAGGAAUUUUUAUGCUUAUGCGUCUGCGAGAUUCGCUCAAUUUCAAAAGAAUUUCCAGC ....((...(((((((((((................(((..((....))..)))...((.....))))))))).))))..))..(((.(((((((..............)))))))))). ( -30.64) >consensus UCCAGC_ACGGGCUAAAAAUAACAACCAAAUCCAUUGCCCUCCGUGAGGGAGGCGCAUCUGCAGGAAUUUUUAUGCUUAUGCGUCUGCGAGAUUCGCUCAAUUUCAAAAGAAUUUCCAGC ....((.(..((((((((((..(.............(((..((....))..)))((....)).)..))))))).)))..)))..(((.(((((((..............)))))))))). (-30.26 = -30.71 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:51 2006