Locus 4271

Sequence ID 2R_DroMel_CAF1
Location 14,080,004 – 14,080,124
Length 120
Max. P 0.519225
window6857

overview

Window 7

Location 14,080,004 – 14,080,124
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 65.83
Mean single sequence MFE -26.53
Consensus MFE -10.83
Energy contribution -12.50
Covariance contribution 1.67
Combinations/Pair 1.17
Mean z-score -2.26
Structure conservation index 0.41
SVM decision value -0.03
SVM RNA-class probability 0.519225
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14080004 120 + 20766785
UCACUAGUUUUAAAGAUGUCGAAAGGCGUUUUAAGCCCAUUAAAGCUUAGUUUUCAAAAUCUGAUUGCACUUAAGAUCUGGCUAAAGUGGCUUUGCUUGGCCAUAAAAACUAAGAUCCAU
....(((((((.((((((((....))))))))..(((...(((((((..((..(((.....)))..))((((.((......)).)))))))))))...)))....)))))))........ ( -29.90)
>DroSim_CAF1 4581 103 + 1
UUACUAGUUUUAAACAUGUUGAAAGGCAUUUUAAGCCCAUUUAAGCCUAGUUAUUAAA-----------------AUCUGGCUAAAGUGGCUUUGCUGGGCCAUUAAAACUAACCCCCAU
....(((((((((..(((((....))))).....(((((...(((((((((((.....-----------------...))))))....)))))...)))))..)))))))))........ ( -28.30)
>DroYak_CAF1 5252 105 + 1
UUAUGUCUUUUAAACACUUGAAAACGCAUCGAAAG---------------UAAUUAAAAUGUGAUUGCACUUGAGUUCUGGCUAAAGUGGCUUUGCCUGGCCAUAAAAACUAAGACUCCU
..((((.((((((....))))))..)))).....(---------------((((((.....)))))))....((((..(((.....((((((......)))))).....)))..)))).. ( -21.40)
>consensus
UUACUAGUUUUAAACAUGUCGAAAGGCAUUUUAAGCCCAUU_AAGC_UAGUUAUUAAAAU_UGAUUGCACUU_AGAUCUGGCUAAAGUGGCUUUGCUUGGCCAUAAAAACUAAGACCCAU
....(((((((....(((((....))))).........................................................((((((......)))))).)))))))........ (-10.83 = -12.50 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:50 2006