Locus 427

Sequence ID 2R_DroMel_CAF1
Location 2,496,036 – 2,496,132
Length 96
Max. P 0.867683
window831

overview

Window 1

Location 2,496,036 – 2,496,132
Length 96
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 90.04
Mean single sequence MFE -25.69
Consensus MFE -18.58
Energy contribution -19.02
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -2.49
Structure conservation index 0.72
SVM decision value 0.86
SVM RNA-class probability 0.867683
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2496036 96 - 20766785
ACGCGCCGGCAAUCCCGGCCUCGAAACUUCCCCU-UUUUCAGGAGGGGUGCUGCAUCCCAAUCCCCACACCACUGUACACCUCACUUGUCUACAGAA
..(((((((.....)))))..........(((((-((....)))))))....))..................(((((.((.......)).))))).. ( -25.30)
>DroSec_CAF1 7495 96 - 1
ACGCGCCGGCAAUCCCGGCCUCGAAACUUCCCCU-UUUCCAGCAGCGGUGGUGCAUCCCAAUCCCCACACCACUGCACACCUCACUUGUCCACAGAA
..(((((((.....)))))...((((........-))))..)).(((((((((..............)))))))))..................... ( -26.14)
>DroSim_CAF1 7478 96 - 1
ACGCGCCGGCAAUCCCGGCCUCGAAACUUCCCCU-UUUCCAGCAGCGGUGGUGCAUCCCAAUCCCCACACCACUGUACACCUCACUUGUCCACAGAA
..(((((((.....)))))...((((........-))))..)).(((((((((..............)))))))))..................... ( -23.84)
>DroEre_CAF1 7585 96 - 1
ACGCGCCGGCAAUCCCGGCCUCAAAACUUCCCCU-UUCUCAGGGGCGGUGGUGCAUCCCAAUCCCCACACCACUCUGUACCUCACUUGUCCACGUAA
.((((((((.....)))))...........((((-.....)))))))((((((..............))))))........................ ( -25.44)
>DroYak_CAF1 7539 97 - 1
ACGUGCCGGCCAUCCCGGCCUCAAAACUUCCCCUUUUCUCUGGGGCGGUGGUGCAUCCCAAUCCCCACACCACUGUAUCCCUCACUUGUCCAUGUAA
(((((..((((.....))))..........(((........)))(((((((((..............)))))))))..............))))).. ( -27.74)
>consensus
ACGCGCCGGCAAUCCCGGCCUCGAAACUUCCCCU_UUUUCAGGAGCGGUGGUGCAUCCCAAUCCCCACACCACUGUACACCUCACUUGUCCACAGAA
....(((((.....))))).........................(((((((((..............)))))))))..................... (-18.58 = -19.02 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:22 2006