Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,078,250 – 14,078,356 |
Length | 106 |
Max. P | 0.880454 |
Location | 14,078,250 – 14,078,356 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.60 |
Mean single sequence MFE | -31.13 |
Consensus MFE | -23.34 |
Energy contribution | -23.12 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -3.32 |
Structure conservation index | 0.75 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14078250 106 + 20766785 CAACAAAUUCAGCCUGUCAACCGGGC----GAAACAAUGCAAAGUAAGCUCUCUGUCAUUU-------UGCAAUUUGCAAUUGGAGUAGCCCACCUCAUGGCUGCACAAAAAGC---AAA .......(((.(((((.....)))))----)))....((((((((..((.....)).))))-------)))).(((((..(((..((((((........)))))).)))...))---))) ( -29.00) >DroSim_CAF1 2802 106 + 1 CAACAAAUUCAGCCUGUCAACCAGGC----GAAACAAUGCAAAGUAAGCUCUCUGUCAUUU-------UGCAAUUUGCAAUUGGAGUAGCCCACCUCACGGCUGCACAAAAAGC---AAA .......(((.(((((.....)))))----)))....((((((((..((.....)).))))-------)))).(((((..(((..((((((........)))))).)))...))---))) ( -29.80) >DroYak_CAF1 3465 120 + 1 CAACAAAUGCAGCCUGUCAACCGGGCAACCGAAACAAUGCAAAGUAAGCUCUCUGUCAUUUUGCAUUUUGCAAUUUGCAAUUGGAGUAGCCCACCUCACGGCUGCACAAAAAGUGAAAAA .......(((((((((......((((..((((...((((((((((..((.....)).))))))))))((((.....))))))))....))))....)).))))))).............. ( -34.60) >consensus CAACAAAUUCAGCCUGUCAACCGGGC____GAAACAAUGCAAAGUAAGCUCUCUGUCAUUU_______UGCAAUUUGCAAUUGGAGUAGCCCACCUCACGGCUGCACAAAAAGC___AAA ...........(((((.....)))))........(((((((((....((....................))..))))).))))..((((((........))))))............... (-23.34 = -23.12 + -0.22)
Location | 14,078,250 – 14,078,356 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.60 |
Mean single sequence MFE | -35.07 |
Consensus MFE | -27.22 |
Energy contribution | -27.33 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.14 |
Structure conservation index | 0.78 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14078250 106 - 20766785 UUU---GCUUUUUGUGCAGCCAUGAGGUGGGCUACUCCAAUUGCAAAUUGCA-------AAAUGACAGAGAGCUUACUUUGCAUUGUUUC----GCCCGGUUGACAGGCUGAAUUUGUUG ...---..........(((((.(.((.(((((........((((.....)))-------)((((.(((((......))))))))).....----))))).)).)..)))))......... ( -28.20) >DroSim_CAF1 2802 106 - 1 UUU---GCUUUUUGUGCAGCCGUGAGGUGGGCUACUCCAAUUGCAAAUUGCA-------AAAUGACAGAGAGCUUACUUUGCAUUGUUUC----GCCUGGUUGACAGGCUGAAUUUGUUG ...---(((((((((((.(((....)))..))........((((.....)))-------)....))))))))).......(((..((((.----(((((.....))))).)))).))).. ( -34.70) >DroYak_CAF1 3465 120 - 1 UUUUUCACUUUUUGUGCAGCCGUGAGGUGGGCUACUCCAAUUGCAAAUUGCAAAAUGCAAAAUGACAGAGAGCUUACUUUGCAUUGUUUCGGUUGCCCGGUUGACAGGCUGCAUUUGUUG .............(((((((((..(((((((((.(((....((((..((((.....))))..)).))))))))))))))..)..((((((((....))))..))))))))))))...... ( -42.30) >consensus UUU___GCUUUUUGUGCAGCCGUGAGGUGGGCUACUCCAAUUGCAAAUUGCA_______AAAUGACAGAGAGCUUACUUUGCAUUGUUUC____GCCCGGUUGACAGGCUGAAUUUGUUG ................(((((((.((.(((((.........(((.....)))........((((.(((((......))))))))).........))))).)).)).)))))......... (-27.22 = -27.33 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:42 2006