Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,076,631 – 14,076,743 |
Length | 112 |
Max. P | 0.942712 |
Location | 14,076,631 – 14,076,743 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.89 |
Mean single sequence MFE | -40.50 |
Consensus MFE | -37.47 |
Energy contribution | -37.47 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.51 |
Structure conservation index | 0.93 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14076631 112 + 20766785 UCUGCUGCAUAAAUAAGUAGGUUGCUGCUGUUCGCCUGCCUGGCGGCCUGACAUGUGAAUUGAUAUGCCAACGCAACAUGGCUAAAACCGCAAGGCAACUAGCAA--------GCGGCAA ((((((.........))))))(((((((((((.(..(((((.((((.....((((((..(((......)))..).))))).......)))).))))).).))).)--------))))))) ( -37.90) >DroSim_CAF1 1149 112 + 1 UCUGCUGCAUAAAUAAGUAGGUUGCUGCUGUUCGCCUGCCUGGCGGCCUGACAUGUGAAUUGAUAUGCCAACGCAACAUGGCUAAAACCGCAAGGCAACUAGCAA--------GCGGCAA ((((((.........))))))(((((((((((.(..(((((.((((.....((((((..(((......)))..).))))).......)))).))))).).))).)--------))))))) ( -37.90) >DroYak_CAF1 1318 120 + 1 UCUGCUGCAUAAAUAAGUAGGUUGCUGCUGUUCGCCUGCCUGGCGGCCUGACAUGUGAAUUGAUAUGCCAACGCAACAUGGCUAAAACCGCAAGGCAACUGGCAAGCAGCAAAGCGGCAA .(((((.........)))))((((((((((((.((((((((.((((.....((((((..(((......)))..).))))).......)))).)))))...))).))))))..)))))).. ( -45.70) >consensus UCUGCUGCAUAAAUAAGUAGGUUGCUGCUGUUCGCCUGCCUGGCGGCCUGACAUGUGAAUUGAUAUGCCAACGCAACAUGGCUAAAACCGCAAGGCAACUAGCAA________GCGGCAA ..((((((...........((((...((.(..((((.....))))..)...((((((..(((......)))..).)))))))...))))((.((....)).))..........)))))). (-37.47 = -37.47 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:38 2006