Locus 4264

Sequence ID 2R_DroMel_CAF1
Location 14,076,486 – 14,076,603
Length 117
Max. P 0.567930
window6843

overview

Window 3

Location 14,076,486 – 14,076,603
Length 117
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 89.08
Mean single sequence MFE -49.47
Consensus MFE -36.04
Energy contribution -38.04
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.27
Structure conservation index 0.73
SVM decision value 0.07
SVM RNA-class probability 0.567930
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14076486 117 + 20766785
CCCAGGAUGCAUGGCCAACGAGACCCAGUCAGAACGUGGCCAUCAGUCAGAGUGUGUGCAUUCUGGCUCC--GUCCGAAACGAAGUUGGAGCUAAAGCUUCGC-CUCGGAGCUGGACCUG
..((((.((.(((((((.((.(((...)))....)))))))))))(((((((((....)))))))))(((--((((((..(((((((........))))))).-.)))))..)))))))) ( -49.00)
>DroSim_CAF1 1002 119 + 1
CCCAGGAUGCAUGGCCAACGAGCCCCAGUCAGAACGUGGCCAUCAGUCAGAGUGUGUGCAUUCUGGCUCCGCGUCCGAAUCGAAGUUGGAGCUGAAGCUUCGC-CUCGGAGCUGGAGCUG
..(((((((((((((((.((..(........)..))))))).((.....))....))))))))))(((((((.(((((..(((((((........))))))).-.))))))).))))).. ( -51.40)
>DroYak_CAF1 1164 114 + 1
CCCAGGAUGCAUGGCCAACGAGCUGCAGUCAGAACGUGGCCAUCAGUCAGUGUGUGUGCAUUCUGGCUCC------GAGUCCAAGUUGGAGCUGAAGCCUUGUGCUCGGAGCUGGAACUG
..((((((..(((((((.((..(((....)))..)))))))))..)))............(((..(((((------(((..((((.....((....))))))..))))))))..)))))) ( -48.00)
>consensus
CCCAGGAUGCAUGGCCAACGAGCCCCAGUCAGAACGUGGCCAUCAGUCAGAGUGUGUGCAUUCUGGCUCC__GUCCGAAUCGAAGUUGGAGCUGAAGCUUCGC_CUCGGAGCUGGAACUG
.((((..((.(((((((.((..............)))))))))))(((((((((....)))))))))......(((((..(((((((........)))))))...))))).))))..... (-36.04 = -38.04 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:37 2006