Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,485,656 – 2,485,749 |
Length | 93 |
Max. P | 0.967472 |
Location | 2,485,656 – 2,485,749 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 91.76 |
Mean single sequence MFE | -32.73 |
Consensus MFE | -25.66 |
Energy contribution | -26.34 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.09 |
Mean z-score | -2.40 |
Structure conservation index | 0.78 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.880953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2485656 93 + 20766785 CUUUUCCGGCUUUUACAAUAUGUUCGCGCUGUUUGAUAUGCUUAACAGCUGGCAGUAGCUGCUUGUCGAGGUUCUGGGGCUCAAUGCCGCCGG .....(((((.................((((((..........)))))).((((..((((.(.............).))))...))))))))) ( -27.62) >DroSec_CAF1 39816 93 + 1 CUUUUCCGGCUUUUACAAUAUGUUGGCGCUGUUUGGUAUGCUUAACAGCUGGCAGUAGCUGCUUGUCGAUGUACUGUGGCUCAAUGCCGCCGG .....(((((....(((.(((((((((((((((.((....)).)))))).(((((...))))).))))))))).)))(((.....)))))))) ( -37.80) >DroSim_CAF1 40052 93 + 1 CUUUUCCGGCUUUUACAAUAUGUUGGCGCUGUUUGGUAUGCUUAACAGCUGGCAGUAGCUGCUUGUCGAGGUUCUGUGGCUCAAUGCCGCCGG .....(((((....(((..((.(((((((((((.((....)).)))))).(((((...))))).))))).))..)))(((.....)))))))) ( -35.70) >DroYak_CAF1 38398 93 + 1 CUUUUCCGGCUUUUACAAUUUGUUCGCGCUGCUUGGUUAGUUUAACAGCUGGCAGUAGCUGCUUGUUCAGGUUGUGUGCCUCAAUGCCGCUGG .....(((((...(((((((((..((.((.(((..((((((......))))))...))).)).))..))))))))).((......)).))))) ( -29.80) >consensus CUUUUCCGGCUUUUACAAUAUGUUCGCGCUGUUUGGUAUGCUUAACAGCUGGCAGUAGCUGCUUGUCGAGGUUCUGUGGCUCAAUGCCGCCGG .....(((((.................((((((.((....)).)))))).((((..((((((.............))))))...))))))))) (-25.66 = -26.34 + 0.69)
Location | 2,485,656 – 2,485,749 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 91.76 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -23.04 |
Energy contribution | -23.35 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.05 |
Mean z-score | -2.18 |
Structure conservation index | 0.90 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2485656 93 - 20766785 CCGGCGGCAUUGAGCCCCAGAACCUCGACAAGCAGCUACUGCCAGCUGUUAAGCAUAUCAAACAGCGCGAACAUAUUGUAAAAGCCGGAAAAG ((((((((.....)))........(((.(..((((...))))..((((((..........)))))))))).............)))))..... ( -26.20) >DroSec_CAF1 39816 93 - 1 CCGGCGGCAUUGAGCCACAGUACAUCGACAAGCAGCUACUGCCAGCUGUUAAGCAUACCAAACAGCGCCAACAUAUUGUAAAAGCCGGAAAAG ((((((((.....)))((((((.........((((...))))..((((((..........)))))).......))))))....)))))..... ( -28.70) >DroSim_CAF1 40052 93 - 1 CCGGCGGCAUUGAGCCACAGAACCUCGACAAGCAGCUACUGCCAGCUGUUAAGCAUACCAAACAGCGCCAACAUAUUGUAAAAGCCGGAAAAG ((((((((.....)))...........((((((((...))))..((((((..........)))))).........))))....)))))..... ( -26.70) >DroYak_CAF1 38398 93 - 1 CCAGCGGCAUUGAGGCACACAACCUGAACAAGCAGCUACUGCCAGCUGUUAAACUAACCAAGCAGCGCGAACAAAUUGUAAAAGCCGGAAAAG ....((((.....((((......(((......)))....)))).((((((..........)))))).................))))...... ( -21.10) >consensus CCGGCGGCAUUGAGCCACAGAACCUCGACAAGCAGCUACUGCCAGCUGUUAAGCAUACCAAACAGCGCCAACAUAUUGUAAAAGCCGGAAAAG ((((((((.....)))...........((((((((...))))..((((((..........)))))).........))))....)))))..... (-23.04 = -23.35 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:21 2006