Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,073,229 – 14,073,325 |
Length | 96 |
Max. P | 0.542293 |
Location | 14,073,229 – 14,073,325 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 76.05 |
Mean single sequence MFE | -32.25 |
Consensus MFE | -20.98 |
Energy contribution | -21.03 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.32 |
Mean z-score | -1.15 |
Structure conservation index | 0.65 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14073229 96 - 20766785 --------U-UCUUUUCCAU-CCAAACAGAGCCUGCGCAAGCACUGCGAUGUGA-AGGAGGUGGUCGAGGCCCAUGUGAUCAUGCGCCAGGUGGCGCACAACAUUGA --------.-((((..((((-((..(((..((.(((....)))..))..)))..-..).)))))..)))).(.((((.....((((((....))))))..)))).). ( -32.80) >DroVir_CAF1 584 100 - 1 -----CUAACUCCCUCGCUC-CCUUGUAGAGCCUGCGCAAGCACUGCGAUGUCA-AGGAGGUGGCCGAGGCGUAUGCCAUAAUGCGUCAGGUAGCGCAUCACAUUGA -----....(((..((((..-(((((((..((.(((....)))..))..)).))-)))..))))..)))((((.((((...........)))))))).......... ( -33.70) >DroWil_CAF1 707 104 - 1 GCCUUUCUU-CUUUUUCUUU-AUCGACAGAGCCUACGUAAGCAUUGCGAUGUCA-AGGAGGUGGCCGAGGCGUAUGCCAUAAUGCGUCAGGUGGCCCACAAUAUUGA ......(((-(((......(-((((.(((.((........)).))))))))..)-)))))(((((((.(((((((......)))))))...))).))))........ ( -29.50) >DroYak_CAF1 1014 89 - 1 -----------------CAUCCCAAACAGAGUCUGCGCAAGCACUGCGAUGUGA-AGGAGGUGGUCGAGGCGCAUGUGAUCAUGCGUCAGGUGGCGCACAACAUUGA -----------------..(((...(((..((.(((....)))..))..)))..-.))).(((((((.((((((((....))))))))...)))).)))........ ( -32.70) >DroAna_CAF1 1140 96 - 1 --------U-UUAUUUAUUU-UGAUAUAGAGCCUCCGCAAGCACUGCGACGUCA-AGGAGGUGGCCGAGGCCUAUGCCAUAAUGCGCCAGGUGGCGCACAACAUCGA --------.-..........-((.(((((.(((((((((.....))))..((((-......)))).)))))))))).))...((((((....))))))......... ( -31.40) >DroPer_CAF1 12176 97 - 1 --------U-CUUUCUCCAC-AUUCACAGAGCCUGCGCAAGCACUGCGAUGUCAAAGGAGGUGGCCGAGGCCUAUGUGAUCAUGCGCCAGGUGGCGCACAACAUUGA --------.-..........-..(((((..((((((....)).(.((.((.((....)).)).)).)))))...)))))...((((((....))))))......... ( -33.40) >consensus ________U_UUUUUUCCAU_CCAAACAGAGCCUGCGCAAGCACUGCGAUGUCA_AGGAGGUGGCCGAGGCCUAUGCCAUAAUGCGCCAGGUGGCGCACAACAUUGA .........................(((..((((((....)).(.((.((.((....)).)).)).)))))...))).....((((((....))))))......... (-20.98 = -21.03 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:32 2006