Locus 4258

Sequence ID 2R_DroMel_CAF1
Location 14,065,988 – 14,066,078
Length 90
Max. P 0.667748
window6837

overview

Window 7

Location 14,065,988 – 14,066,078
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 98.52
Mean single sequence MFE -28.97
Consensus MFE -29.19
Energy contribution -28.97
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.49
Structure conservation index 1.01
SVM decision value 0.28
SVM RNA-class probability 0.667748
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14065988 90 + 20766785
CAUAUUCCACCGGCUCCACCUGCUCCAUCUGCUCAUAUGGUACACCUGUCCGCCCGUGUGUGCUGGGUUAUCAGGAUCAAACGCCGGCGG
......((.(((((......((..((((........))))..))((((...(((((.(....))))))...)))).......))))).)) ( -28.50)
>DroSec_CAF1 36282 90 + 1
CAUAUUCCACCGGCUCCACCUGCUCCAUCUGCUCAUAUGGUACACCUGUCUGCCCGUGUGUGCUGGGUUAUCAGGAUCAAACGCCGGCGG
......((.(((((......((..((((........))))..))((((...(((((.(....))))))...)))).......))))).)) ( -29.20)
>DroSim_CAF1 32093 90 + 1
CAUAUUCCACCGGCUCCACCUGCUCCAUCUGCUCAUAUGGUACACCUGUCCGCCCAUGUGUGCUGGGUUAUCAGGAUCAAACGCCGGCGG
......((.(((((......((..((((........))))..))((((...(((((.(....))))))...)))).......))))).)) ( -29.20)
>consensus
CAUAUUCCACCGGCUCCACCUGCUCCAUCUGCUCAUAUGGUACACCUGUCCGCCCGUGUGUGCUGGGUUAUCAGGAUCAAACGCCGGCGG
......((.(((((......((..((((........))))..))((((...(((((.(....))))))...)))).......))))).)) (-29.19 = -28.97 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:31 2006