Locus 4257

Sequence ID 2R_DroMel_CAF1
Location 14,061,415 – 14,061,506
Length 91
Max. P 0.691669
window6836

overview

Window 6

Location 14,061,415 – 14,061,506
Length 91
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 73.56
Mean single sequence MFE -31.38
Consensus MFE -11.39
Energy contribution -14.37
Covariance contribution 2.98
Combinations/Pair 1.27
Mean z-score -2.09
Structure conservation index 0.36
SVM decision value 0.33
SVM RNA-class probability 0.691669
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14061415 91 + 20766785
--------UGCUUCCGGAUCGGCUCACUAAUUAAUGAAAAUGGUGCGGUAAGCGGGACCGAAGGAAACUUGGUCAG-CAAACUUGAUUAGGUGAUUGGGU--
--------.(((((((.((((..(((........)))...)))).))).))))..((((.(((....)))))))..-...(((..(((....)))..)))-- ( -29.10)
>DroVir_CAF1 46692 88 + 1
GUGGUACAGCCUUUCGCAUCGGUUCACUAAUUAAUGAAAAUUGAGUCG--AGCCGGCUAGACGGACACG--------UUAAUAUUAUUAA--AACUGGGC--
........((((...((..(((((((((...((((....))))))).)--)))))))..((((....))--------))...........--....))))-- ( -19.40)
>DroSec_CAF1 31659 99 + 1
GUUGGCCCUGCUUCCGGAUCGGCUCACUAAUUAAUGAAAAUGGUGCGGUAAGCGGGACCGAAGGAAACUCGGUCAG-CAAACUUGAUUAGGUGAUUGGGU--
((((..((((((((((.((((..(((........)))...)))).))).)))))))(((((.(....)))))))))-)..(((..(((....)))..)))-- ( -37.00)
>DroSim_CAF1 27457 99 + 1
GUUGGCCCUGCUUCCGGAUCGGCUCACUAAUUAAUGAAAAUGGUGCGGUAAGCGGGACCGAAGGAAACUCGGUCAG-CAAACUUGAUUAGGUGAUUGGGU--
((((..((((((((((.((((..(((........)))...)))).))).)))))))(((((.(....)))))))))-)..(((..(((....)))..)))-- ( -37.00)
>DroYak_CAF1 30358 99 + 1
GCUGGGCCUGCUUCCGGAUCGGCUCACUAAUUAAUGAAAAUGGUGCGGUAAGCGGGGCCGAAGGAAACUCGGUCAG-CUAACUUGAUUGGGUGAUUGGGC--
((((..((((((((((.((((..(((........)))...)))).))).)))))))(((((.(....)))))))))-)...((..(((....)))..)).-- ( -38.40)
>DroAna_CAF1 40824 86 + 1
----GGCCUGCUUCCGGAUCGAGUCACUAAUUAAUGAAAAUUGUGCGA------------ACGGAAACCCGGUCAGGCUAACCAGAUUAGUCGUCUGGCCUC
----((((((...((((.(((...(((.((((......))))))))))------------..(....))))).))))))..((((((.....)))))).... ( -27.40)
>consensus
GUUGGCCCUGCUUCCGGAUCGGCUCACUAAUUAAUGAAAAUGGUGCGGUAAGCGGGACCGAAGGAAACUCGGUCAG_CAAACUUGAUUAGGUGAUUGGGC__
........((((((((.((((..(((........)))...)))).))).))))).(((((.((....)))))))............................ (-11.39 = -14.37 +   2.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:30 2006