| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,055,423 – 14,055,513 |
| Length | 90 |
| Max. P | 0.831328 |
| Location | 14,055,423 – 14,055,513 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.51 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -19.51 |
| Energy contribution | -18.93 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.831328 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14055423 90 - 20766785 U-------GACGUCGUUAGAUAGACA------GAAAUGGCGCAAACUUACGUGUAAUUAGACGCGUCUGGGCGCGAGGAUUAGCAAUUAAGCGAAUGUCCUGU .-------...(((........))).------......((((...(..((((((......))))))..).)))).(((((..((......))....))))).. ( -26.00) >DroPse_CAF1 29488 86 - 1 A-------GACGUC--UGAAAGUGCA--------GACGACACCGAGUUAGGUGUAAUUAGACGCGUCUGGGCGCGAGGAUUAGCAAUUAAGCGAAUGUCCUGC .-------..((((--((......))--------))))(((((......))))).......(((((....)))))(((((..((......))....))))).. ( -31.70) >DroEre_CAF1 22879 90 - 1 C-------GAUGGCGUUGGAUGGACA------GAAAUGGCGCAAACUUACGUGUAAUUAGACGCGUCUGGGCGCGAGGAUUAGCAAUUAAGCGAGUGUCCUGU .-------................((------....))((((...(..((((((......))))))..).)))).(((((..((......))....))))).. ( -24.20) >DroYak_CAF1 23958 96 - 1 U-------GAUGUCGUUGGAUAGACAGAAACAGAAAUGGCGCAAACUUACGUGUAAUUAGACGCGUCUGGGCGCGAGGAUUAGCAAUUAAGCGAAUGUCCUGU .-------..((((........))))....((....))((((...(..((((((......))))))..).)))).(((((..((......))....))))).. ( -28.10) >DroAna_CAF1 34856 97 - 1 UGAGAGGAGACCUUUUGAAAUAGACA------GGAACGGCGCAAACUUACGUGUAAUUAGACGCGUCUGGGCGCGAGGAUUAGCAAUUAAGUGAAUGUCCUGU .((((((...)))))).......(((------(((.((......(((((..(((((((...(((((....)))))..)))).)))..)))))...)))))))) ( -26.30) >DroPer_CAF1 28247 86 - 1 A-------GACGUC--UGAAAGUGCA--------GACGACACCGAGUUAGGUGUAAUUAGACGCGUCUGGGCGCGAGGAUUAGCAAUUAAGCGAAUGUCCUGC .-------..((((--((......))--------))))(((((......))))).......(((((....)))))(((((..((......))....))))).. ( -31.70) >consensus U_______GACGUCGUUGAAUAGACA______GAAACGGCGCAAACUUACGUGUAAUUAGACGCGUCUGGGCGCGAGGAUUAGCAAUUAAGCGAAUGUCCUGU ......................................((((........)))).......(((((....)))))(((((..((......))....))))).. (-19.51 = -18.93 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:29 2006