Locus 4254

Sequence ID 2R_DroMel_CAF1
Location 14,051,288 – 14,051,385
Length 97
Max. P 0.737623
window6831

overview

Window 1

Location 14,051,288 – 14,051,385
Length 97
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 75.75
Mean single sequence MFE -31.62
Consensus MFE -13.90
Energy contribution -17.86
Covariance contribution 3.96
Combinations/Pair 1.18
Mean z-score -1.91
Structure conservation index 0.44
SVM decision value 0.44
SVM RNA-class probability 0.737623
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14051288 97 - 20766785
GG-----CAUGGGCAUACAGAUACGUAUAUGGGGUAUGUCCCCACAUGGCAACAGCAGAGUGUUGUUUUCAUGUGGCGCUGAGAGCGUU--UUCUAGUGCGUUU
((-----(..((((((((..(((....)))...))))))))((((((((.((((((.....)))))).)))))))).)))..((((((.--.......)))))) ( -35.10)
>DroSec_CAF1 21691 97 - 1
GG-----CAUGGGUAUACAGAUACGUAUAUGGGAUAUGUCCCCACAUGGCAACAGCAGAGUGUUGUUUUCAUGUGGCGCUGAGAGCGUU--UUCUAGUGCGUUU
((-----((((.((((((......))))))....))))))..(((((((.((((((.....)))))).)))))))(((((.((((....--))))))))).... ( -32.60)
>DroSim_CAF1 17391 97 - 1
GG-----CAUGGGUAUACAGAUACGUAUAUGGGGUAUGUCCCCACAUGGCAACAGCAGAGUUUUGUUUUCAUGUGGCGCUGAGAGCGUU--UUCUAGUGCGUUU
.(-----((((((...(((((.((.....(((((.....)))))..((....)).....))))))).))))))).(((((.((((....--))))))))).... ( -29.00)
>DroEre_CAF1 18829 92 - 1
----------GGGG-UAC-CAUGGGUAUGUGGGGUAUGUCCCCACUUGGCAACAGCAGACCGUUGUUUUGGUGCGGCGCUGGGAGCGUUUUUUCUAGUGCGUUU
----------...(-(((-((...((..((((((.....))))))...))((((((.....)))))).)))))).((((((((((.....)))))))))).... ( -37.90)
>DroAna_CAF1 30729 84 - 1
GGGCCUCCACGGGGGCCCACAUACACAUAU--------CCCCCACAUGGCAACAGCGAGUUUUUAUUUUC----------GAGAGCAGU--UUCUAGUGCGUUU
(((((((....))))))).....(((....--------........((....))....((((((......----------))))))...--.....)))..... ( -23.50)
>consensus
GG_____CAUGGGGAUACAGAUACGUAUAUGGGGUAUGUCCCCACAUGGCAACAGCAGAGUGUUGUUUUCAUGUGGCGCUGAGAGCGUU__UUCUAGUGCGUUU
..........((((((((..(((....)))...)))))))).(((((((.((((((.....)))))).)))))))(((((.((((......))))))))).... (-13.90 = -17.86 +   3.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:25 2006