Locus 4253

Sequence ID 2R_DroMel_CAF1
Location 14,042,250 – 14,042,344
Length 94
Max. P 0.800678
window6830

overview

Window 0

Location 14,042,250 – 14,042,344
Length 94
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 86.79
Mean single sequence MFE -31.95
Consensus MFE -28.24
Energy contribution -28.63
Covariance contribution 0.39
Combinations/Pair 1.08
Mean z-score -1.71
Structure conservation index 0.88
SVM decision value 0.62
SVM RNA-class probability 0.800678
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14042250 94 - 20766785
-----------------UUGA--GAUAUAGCGGAGCACUUGUUGCUGCUCUGGCACAACGAGCCAAACUGACUUUAUGCGGCACUCGCUGCGCUCAAGUAACAUGUGUGCGCA
-----------------....--......(((..((((.(((((((((..((((.......))))............(((((....)))))))...))))))).)))).))). ( -31.90)
>DroSec_CAF1 12532 94 - 1
-----------------UUCA--GAUAUAGCGGAGCACUUGUUGCUGCUCUGGCACAACGAGCCAAACUGACUUUAUGCGGCACUCGCUGCGUUCAAGUAACAUGUGUGCGCA
-----------------....--......(((..((((.(((((((....((((.......))))...(((....(((((((....))))))))))))))))).)))).))). ( -32.60)
>DroSim_CAF1 8167 100 - 1
-----------UUCAGAUUCA--GAUAUAGCGGAGCACUUGUUGCUGCUCUGGCACAACGAGCCAAACUGACUUUAUGCGGCACUCGCUGCGCUCAAGUAACAUGUGUGCGCA
-----------..........--......(((..((((.(((((((((..((((.......))))............(((((....)))))))...))))))).)))).))). ( -31.90)
>DroEre_CAF1 9587 100 - 1
-----------UUCAGAUACA--GAUACAGCGGAGCACUUGUUGCUGCUCUGGCACAACGAGCCAAACUGACUUUAUGCGGCACUCGCUGCGCUCAAGUAACAUGUUUGCGCA
-----------..........--......((.((((.(((((((.(((....))))))))))...............(((((....)))))))))..((((.....)))))). ( -29.50)
>DroYak_CAF1 10107 100 - 1
-----------UUCAGAUUCA--GAUAUAGCGGAGCACUUGUUGCUGCUCUGGCACAACGAGCCAAACUGACUUUAUGCGGCACUCGCUGCGCUCAAGUAACAUGUGUGCGCA
-----------..........--......(((..((((.(((((((((..((((.......))))............(((((....)))))))...))))))).)))).))). ( -31.90)
>DroAna_CAF1 21387 112 - 1
AUAAAAAAAGAUACAGAUACGGGGAUACAGCGGAGCACUUGUUGCUGCUCUGGCACAUCGAGCCAAACUGACACUCUGCGGCAAGUGCUGCGCUCAAGUAACAUAU-UGUACA
.................(((((.(.(((((((.((((((((((((((.((((((.......))))....))))....)))))))))))).))))...))).)...)-)))).. ( -33.90)
>consensus
___________UUCAGAUUCA__GAUAUAGCGGAGCACUUGUUGCUGCUCUGGCACAACGAGCCAAACUGACUUUAUGCGGCACUCGCUGCGCUCAAGUAACAUGUGUGCGCA
.............................(((..((((.(((((((((..((((.......))))............(((((....)))))))...))))))).)))).))). (-28.24 = -28.63 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:24 2006