Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,031,807 – 14,031,927 |
Length | 120 |
Max. P | 0.884176 |
Location | 14,031,807 – 14,031,927 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.19 |
Mean single sequence MFE | -30.26 |
Consensus MFE | -29.74 |
Energy contribution | -29.80 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.11 |
Structure conservation index | 0.98 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884176 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14031807 120 - 20766785 CAGGGGGAGGGCCAGCUGUCUUUUCCUAUUUCUGCAUAAAUCAUGCAAUUUGAUUGCCAAUGAAAUAUACUCUGUUUACGCAAUCGAUUUUGCACAUUUUAUUGGCCUUUUGUUUACGCU ..(((..(((((.....)))))..)))......((...(((((.......)))))(((((((((((.......(....)((((......))))..)))))))))))...........)). ( -30.30) >DroSim_CAF1 61825 120 - 1 CAGGGGGAGGGCCAGCUGUCUUUUCCUAUUUCUGCAUAAAUCAUGCAAUUUGAUUGCCAAUGAAAUAUACUCUGUUUACGCAAUCGAUUUUGCACAUUUUAUUGGCCUUUUGUUUACGCU ..(((..(((((.....)))))..)))......((...(((((.......)))))(((((((((((.......(....)((((......))))..)))))))))))...........)). ( -30.30) >DroEre_CAF1 65230 120 - 1 CAGGGGGAGGACCAGCUGUCUUUUCCUAUUUCUGCAUAAAUCAUGCAAUUUGAUUGCCAAUGAAAUACACUCUGUUUACGCAAUCGAUUUUGCACAUUUUAUUGGCCUUUUGUUUACGCU ..(((..(((((.....)))))..)))......((...(((((.......)))))(((((((((((((.....))....((((......))))..)))))))))))...........)). ( -31.10) >DroYak_CAF1 63907 120 - 1 CAGGGGGAGGGCCAGCUGUCUUUUCCUAUUUCUGCAUAAAUCAUGCAAUUUGAUUGCCAUUGAAAUUCACUCUGUUUACGCAAUCGAUUUUGCACAUUUUAUUGGCCUUUUGUUUACGCU .(((.(((((((((((.................))(((((...(((((.((((((((.....((((.......))))..))))))))..)))))...)))))))))))))).)))..... ( -29.33) >consensus CAGGGGGAGGGCCAGCUGUCUUUUCCUAUUUCUGCAUAAAUCAUGCAAUUUGAUUGCCAAUGAAAUACACUCUGUUUACGCAAUCGAUUUUGCACAUUUUAUUGGCCUUUUGUUUACGCU ..(((..(((((.....)))))..)))......((...(((((.......)))))(((((((((((.......(....)((((......))))..)))))))))))...........)). (-29.74 = -29.80 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:21 2006