| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,480,350 – 2,480,445 |
| Length | 95 |
| Max. P | 0.977294 |
| Location | 2,480,350 – 2,480,445 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 85.26 |
| Mean single sequence MFE | -31.55 |
| Consensus MFE | -23.29 |
| Energy contribution | -23.72 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.977294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2480350 95 - 20766785 UCACUUGGGGUGGGCUGCGUGCGGCUGAAUUGCGCUGGCAGAGAACGU---GGAGCUCAUUAAAAAGUAUAAAACUUUAUCGCCGCCCUGGGUGAAAA (((((..((((((((((.((((((.....)))))))))).(((.....---....))).....(((((.....)))))....))))))..)))))... ( -34.60) >DroSec_CAF1 34475 85 - 1 UCACUUGGGGUUGUCUGCGUG-------------CUGGCAGAGAACGUGGUGGAGCUCAUUAAAAAGUAUAAAACUUUAUCGCCGCCCUUUGUGAAAA ((((..((((((.(((((...-------------...))))).)))(((((((....).....(((((.....)))))..)))))))))..))))... ( -29.20) >DroSim_CAF1 34721 85 - 1 UCACUUGGGGUGGGCUGCGUG-------------CUGGCAGAGAACGUGGUGGAGCUCAUUAAAAAGUAUAAAACUUUAUCGCCGCCCUGGGUGAAAA (((((..((((((((..(((.-------------((.....)).)))..))............(((((.....)))))....))))))..)))))... ( -33.00) >DroEre_CAF1 33563 94 - 1 UCACUUGGGGUGGGUUGCGUGCGG-UGAAUUGCGCUGGAAGAGAACGU---GGAGCUCAUUAAAAAGUAUAAAACUUUAUCGCUGCCCUGGGUGAAAA (((((..(((((((((.(((((((-....)))))).(........)..---).))))).....(((((.....)))))......))))..)))))... ( -29.40) >consensus UCACUUGGGGUGGGCUGCGUG_____________CUGGCAGAGAACGU___GGAGCUCAUUAAAAAGUAUAAAACUUUAUCGCCGCCCUGGGUGAAAA ((((..(((((((.((((..(((.........)))..))))......................(((((.....)))))....)))))))..))))... (-23.29 = -23.72 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:19 2006