| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,030,147 – 14,030,246 |
| Length | 99 |
| Max. P | 0.574133 |
| Location | 14,030,147 – 14,030,246 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 81.88 |
| Mean single sequence MFE | -17.58 |
| Consensus MFE | -11.82 |
| Energy contribution | -11.60 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14030147 99 - 20766785 UUCGAUUGAAUACCAUUAGUGAAAGCAACCCAAACAAGCCAACU-----CAAAUCGCUUAAAGA-AUCAAAUUAAAAUUUUUGUUUACGCUGGCUUUUCAGUCAA ...(((((((........((....)).........((((((...-----......((.((((.(-(..............)).)))).))))))))))))))).. ( -16.44) >DroSim_CAF1 60214 99 - 1 AUCGAUUGAAUACCAUUAGUGAAAGCAACCCAAACAAGCCAACU-----CAAAUCGCUUAAAGA-AUCAAAUUAAAAUUUUUGUUUACGCUGGCCUUUCAGUCAA ...(((((((..(((...(((((............((((.....-----......)))).....-..((((........)))))))))..)))...))))))).. ( -15.60) >DroYak_CAF1 62098 92 - 1 UUAGAUUGAACAGC---AGUGAAAGCAG----------CCAACUCAAGUGAAAUCGCUUAACGAAAUCAAAUUAAAAUUUUUGUUUACGCUGGUCUUUCAGUCAA ...(((((((.(.(---((((.((((((----------.......(((((....)))))...(....)............)))))).))))).)..))))))).. ( -20.70) >consensus UUCGAUUGAAUACCAUUAGUGAAAGCAACCCAAACAAGCCAACU_____CAAAUCGCUUAAAGA_AUCAAAUUAAAAUUUUUGUUUACGCUGGCCUUUCAGUCAA ...(((((((........((....)).............................(((.........((((........))))........)))..))))))).. (-11.82 = -11.60 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:15 2006