Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,029,987 – 14,030,107 |
Length | 120 |
Max. P | 0.925641 |
Location | 14,029,987 – 14,030,107 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -22.00 |
Consensus MFE | -19.70 |
Energy contribution | -19.51 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.23 |
Structure conservation index | 0.90 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14029987 120 + 20766785 GCAUUUACAGCGAAUUCGCAUUCCAAAAAUCAACAAAGUGCAAAACUUUGCCAUACAUUCAACUUUGCACGUUGACAUAAACUACUAUAUAUAGUACAUUGUAAGAACAUGGGAAACAAA .........(((....))).(((((....(((((...(((((((....((.....))......)))))))))))).((((..(((((....)))))..)))).......)))))...... ( -21.00) >DroSim_CAF1 60054 120 + 1 GCAUUUACAGCGAAUUCGCAUUCCAAAAAUCAACAAAGUGCAAAACUUUGCCAUACAUUCAACUUUGCACGUUGACAUAAACUACUAUAUAUAGUACAUUGUAAGAACAUGGGAAACAAA .........(((....))).(((((....(((((...(((((((....((.....))......)))))))))))).((((..(((((....)))))..)))).......)))))...... ( -21.00) >DroEre_CAF1 63324 120 + 1 GCAUUUACAGCGAAUUCGCAUUCCAAAAACCAACAAUGUGUAAAAUUCUGCAACACAUUCAACUUUGCACGUUGACAUAAACUACUAUAUGUAGUACAUUGUAAGAACAUGGGAAACAAA .........(((....))).(((((........(((((((((((...................)))))))))))(((...(((((.....)))))....))).......)))))...... ( -25.01) >DroYak_CAF1 61938 120 + 1 GCAUUUACAGCGAAUUCGCAUUCCAAAAACCAACAAAGUGCAAAAUUUUGCCAUACAUUCAACUUUGCACGUUGACAUAAACUACUAUAUAUAGUACGUUGUACGAACAUGGGAAACAAA .........(((....))).(((((........(((.(((((((.((.((.....))...)).))))))).))).....((((((((....))))).))).........)))))...... ( -21.00) >consensus GCAUUUACAGCGAAUUCGCAUUCCAAAAACCAACAAAGUGCAAAACUUUGCCAUACAUUCAACUUUGCACGUUGACAUAAACUACUAUAUAUAGUACAUUGUAAGAACAUGGGAAACAAA .........(((....))).(((((........(((.(((((((...................))))))).)))..((((..(((((....)))))..)))).......)))))...... (-19.70 = -19.51 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:14 2006