Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,029,547 – 14,029,663 |
Length | 116 |
Max. P | 0.649670 |
Location | 14,029,547 – 14,029,663 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.82 |
Mean single sequence MFE | -33.67 |
Consensus MFE | -27.25 |
Energy contribution | -29.00 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 0.81 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14029547 116 + 20766785 ACGCAAAAAUUCGUCGAACGCAAUUGAUAUCGAGCGUUUGUCUGGAUUAAAGCGGAAAUCAGGGAUAAUCAGUGAUUUUCCAAAGCGCGAGAGUG----UGUGUGUGAAAAAUCCGCUUU .......((((((.(((((((..(((....)))))))))).).)))))((((((((..(((..(.....)..)))(((((((..((((....)))----)...)).))))).)))))))) ( -35.10) >DroSim_CAF1 59607 116 + 1 ACGCAAAAAUUCGUCGAACGAAAUUGAUAUCGAGCGUUUGUCUGGAUUUAAGCGGAAAUCAGGGAUAAUCGGUGAUUUUCCAAAGCGCGCGAGUG----UGUGUGUGAAAAAUCCGCUUU ......(((((((.((((((...(((....))).)))))).).))))))(((((((..(((..(.....)..)))(((((((..((((....)))----)...)).))))).))))))). ( -33.60) >DroEre_CAF1 62868 116 + 1 ACGCAUAAAUUCGUCGAACGAAUUUGAUAUCGAGCGUUUGCCUGGAUUAAAGCGGAAAUCAGCGAAAAUCGGGGAUUUUCCAAAGCGCGCGCGUG----UGUGUGUGAAAAAUCCGCUUA ..((.((((((((.....))))))))...((((...(((((...((((........)))).)))))..))))(((((((.((..((((((....)----))))).)).)))))))))... ( -33.30) >DroYak_CAF1 61487 120 + 1 ACGCUGAAAUUCGUCGAACGAAAUUGAUAUCGAGCGUUUACCUGGAUUAAAGCGGAAAUCAGCGAAAUUCAGUGAUUUUCCAAAGCGCGCGAGUGUGUGUGUGUGUGAAAAAUCCGCUUC .(((((((.(((((.(((((...(((....))).))))).....((((........)))).))))).))))))).(((((((..((((((....))))))...)).)))))......... ( -32.70) >consensus ACGCAAAAAUUCGUCGAACGAAAUUGAUAUCGAGCGUUUGCCUGGAUUAAAGCGGAAAUCAGCGAAAAUCAGUGAUUUUCCAAAGCGCGCGAGUG____UGUGUGUGAAAAAUCCGCUUU .......((((((.((((((...(((....))).)))))).).))))).(((((((......((((((((...))))))))...(((((((........)))))))......))))))). (-27.25 = -29.00 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:13 2006