Locus 4245

Sequence ID 2R_DroMel_CAF1
Location 14,028,360 – 14,028,459
Length 99
Max. P 0.936326
window6811

overview

Window 1

Location 14,028,360 – 14,028,459
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 97.98
Mean single sequence MFE -21.50
Consensus MFE -21.38
Energy contribution -21.78
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.99
SVM decision value 1.25
SVM RNA-class probability 0.936326
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14028360 99 - 20766785
GCCUCGGAAAAACCAAAUCACAAAUAUUGUUUGACCCUCAUUAUGUUUGAAAUUUGCUUUUCCAGGCCCAGCCAACGAACACGAGGACAUUAAAGAUAG
.((((((((((..(((((..(((((((....((.....))..)))))))..))))).)))))).(((...))).........))))............. ( -23.10)
>DroSec_CAF1 58810 99 - 1
GCCACGGAAAAUCCAAAUCACAAAUAUUGUUUGACCCUCAUUAUGUUUGAAAUUUGCUUUUCCAGGCCCAGCCAGCGAGCACGAGGACAUUAAAGAUAG
(((.(((((((..(((((..(((((((....((.....))..)))))))..))))).)))))).(((...))).).).))................... ( -19.20)
>DroSim_CAF1 58403 99 - 1
GCCUCGGAAAAACCAAAUCACAAAUAUUGUUUGACCCUCAUUAUGUUUGAAAUUUGCUUUUCCAGGCCCAGCCAGCGAACACGAGGACAUUAAAGAUAG
.((((((((((..(((((..(((((((....((.....))..)))))))..))))).)))))).(((...))).........))))............. ( -23.10)
>DroEre_CAF1 61608 99 - 1
GCCUCGGAAAAACCAAAUCACAAAUAUUGUUUGACCCUCAUUAUGUUUGAAAUUUGCUUUUCCAGGCCCAGCCAGCGAACACGAGGACAUUAAAGAUAG
.((((((((((..(((((..(((((((....((.....))..)))))))..))))).)))))).(((...))).........))))............. ( -23.10)
>DroYak_CAF1 60238 99 - 1
GCCUCGGAAAAACCAAAUCACAAAUAUUGUUUGACCCUCAUUAUCUUUGAAAUUUGCUUUUCCAGGCCCAGCCAGCGAACACGAGGACAUUAAAGAUAG
.((((((((((..(((((..((((.((....((.....))..)).))))..))))).)))))).(((...))).........))))............. ( -19.00)
>consensus
GCCUCGGAAAAACCAAAUCACAAAUAUUGUUUGACCCUCAUUAUGUUUGAAAUUUGCUUUUCCAGGCCCAGCCAGCGAACACGAGGACAUUAAAGAUAG
.((((((((((..(((((..(((((((....((.....))..)))))))..))))).)))))).(((...))).........))))............. (-21.38 = -21.78 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:06 2006