Locus 4244

Sequence ID 2R_DroMel_CAF1
Location 14,027,799 – 14,027,908
Length 109
Max. P 0.853714
window6810

overview

Window 0

Location 14,027,799 – 14,027,908
Length 109
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 96.53
Mean single sequence MFE -32.80
Consensus MFE -28.60
Energy contribution -29.24
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.55
Structure conservation index 0.87
SVM decision value 0.80
SVM RNA-class probability 0.853714
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14027799 109 + 20766785
UUCUUAAGGCGGGAGCCUCAUU-UUCGGGCUGCCCACGGGCCGCCAAAGAUGUUUACUCUACUAUAUAUUCUGUAAACUUGCCGCCGGGUGUUUUUGGCCUGUUAUUGUC
.......(((((((((((....-...))))).)))((((((((...(((((((((((...............))))))..(((....))))))))))))))))....))) ( -32.36)
>DroSec_CAF1 58267 108 + 1
UUCUUAAGACGGGAGCCUCAUU-UUCGGGCUGCCCACGGGCCGCCAAAGA-GUUUACUCUACUAUAUUUUCUGUAAACUUGCCGCCGGGUGUUUUUGGACUGUUAUUGUC
.(((.(((((((((((((....-...))))).))).(.(((.((....((-((((((...............)))))))))).))).)..))))).)))........... ( -32.16)
>DroSim_CAF1 57856 109 + 1
UUCUUAAGGCGGGAGCCUCAUU-UUCGGGCUGCCCACGGGCCGCCAAAGAUGUUUACUCUACUAUAUAUUCUGUAAACUUGCCGCCGGGUGUUUUUGGCCUGUUAUUGUC
.......(((((((((((....-...))))).)))((((((((...(((((((((((...............))))))..(((....))))))))))))))))....))) ( -32.36)
>DroEre_CAF1 61074 109 + 1
UUCUUAAGGCGGGAGCCUUAUU-UUCGGGCUGCCCACGGGCCGCCAAAGAUGUUUACUUUACUAUAUAUUCUGUAAACUUGCCGCCGGGUGUUUUUGCCCUGUUAUUGUC
.......(((((.((.......-.((.(((.(((....))).)))...)).((((((...............)))))))).)))))((((......)))).......... ( -33.56)
>DroYak_CAF1 59672 110 + 1
UUCUUAAGGCGGGAGCCUUAUUUUUCGGGCUGCCCACGGGCCGCCAAAGAUGUUUACUUUACUAUAUAUUCUGUAAACUUGCCGCCGGGUGUUUUUGCCCUGUUAUUGUC
.......(((((.((.........((.(((.(((....))).)))...)).((((((...............)))))))).)))))((((......)))).......... ( -33.56)
>consensus
UUCUUAAGGCGGGAGCCUCAUU_UUCGGGCUGCCCACGGGCCGCCAAAGAUGUUUACUCUACUAUAUAUUCUGUAAACUUGCCGCCGGGUGUUUUUGGCCUGUUAUUGUC
.......(((((((((((........))))).)))(((((...((((((((((((((...............))))))..(((....))))))))))))))))....))) (-28.60 = -29.24 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:05 2006