Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,021,521 – 14,021,616 |
Length | 95 |
Max. P | 0.741642 |
Location | 14,021,521 – 14,021,616 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 94.82 |
Mean single sequence MFE | -27.92 |
Consensus MFE | -20.60 |
Energy contribution | -20.76 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.63 |
Structure conservation index | 0.74 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14021521 95 - 20766785 GCUUAUUGGUAAUCGGUCAGAUUGUGAUUUGCGCACAAUAAAUGCGUAUUCCAAUUAGUUUAAUUAGCCCGCUUCAUGGC----CGAAUGCCAAAUUCC .....((((((.((((((((((((.((..((((((.......)))))).))))))).(((.....)))........))))----))).))))))..... ( -28.90) >DroSec_CAF1 52135 95 - 1 GCUUAUUGGUAAUCGGUCAGAUUGUGAUUUGCGCACAAUAAAUGCGUAUUCGAAUUAGUUUAAUUAGCCCGCUUCAUGGC----CGAAUGCCAAAUUCC .....((((((.(((((((....(((...((((((.......)))))).........(((.....))).)))....))))----))).))))))..... ( -27.60) >DroSim_CAF1 51556 95 - 1 GCUUAUUGGUAAUCGGUCAGAUUGUGAUUUGCGCACAAUAAAUGCGUAUUCCAAUUAGUUUAAUUAGCCGGCUUCAUGGC----CGAAUGCCAAAUUCC .....((((((.((((((((((((.((..((((((.......)))))).))))))).(((.....)))........))))----))).))))))..... ( -28.90) >DroEre_CAF1 54600 95 - 1 GCUCAUUGGUAAUUGGUCAGAUUGUGAUUUGCGCACAAUAAAUGCGUAUUCCAAUUAGUUUAAUGAGCCCGCUUCAUGGC----CGAAUGCCAAAUUCU .....((((((.((((((.(((((.((..((((((.......)))))).)))))))......(((((.....))))))))----))).))))))..... ( -27.80) >DroYak_CAF1 53099 98 - 1 GCUUAU-GGUAAUUGGUCAGAUUGUGAUUUGCGCACAAUAAAUGCGUAUUCCAAUUAGUUUAAUGAGCCCGCUUCAUGGCCAGCCGAAUGCCAAAUUCU .....(-((((.(((((..(((((.((..((((((.......)))))).))))))).......((.(((........)))))))))).)))))...... ( -26.40) >consensus GCUUAUUGGUAAUCGGUCAGAUUGUGAUUUGCGCACAAUAAAUGCGUAUUCCAAUUAGUUUAAUUAGCCCGCUUCAUGGC____CGAAUGCCAAAUUCC .....((((((.(((....(((((.((..((((((.......)))))).)))))))..........(((........)))....))).))))))..... (-20.60 = -20.76 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:04 2006