Locus 4242

Sequence ID 2R_DroMel_CAF1
Location 14,017,804 – 14,017,896
Length 92
Max. P 0.840404
window6808

overview

Window 8

Location 14,017,804 – 14,017,896
Length 92
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 85.37
Mean single sequence MFE -24.42
Consensus MFE -19.44
Energy contribution -19.75
Covariance contribution 0.31
Combinations/Pair 1.15
Mean z-score -2.59
Structure conservation index 0.80
SVM decision value 0.75
SVM RNA-class probability 0.840404
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14017804 92 + 20766785
-----UACCUGAUGCCGAGCAUCAGAAAUCCAAUUAUAUUCACUUUAUGUACAAAAAGCUCCUGCAGCCGAGCAAAGUGAAUCUCUGAAUGGGGA--AC
-----...(((((((...)))))))...((((.(((.(((((((((...........((((........)))))))))))))...))).))))..--.. ( -23.20)
>DroSec_CAF1 48456 92 + 1
-----UACCUGAUGCCGAGCAUCAGAAAUCCAAUUAUAUUCACUUUAUGUACAAACAGCUCCUGCAGUCGAGCAAAGUGAAUGCCUGAAUGGAAA--AC
-----...(((((((...)))))))...((((.(((((((((((((.(((....)))((((........))))))))))))))..))).))))..--.. ( -28.50)
>DroSim_CAF1 47898 92 + 1
-----UACCUGAUGCCGAGCAUCAGAAAUCCAAUUAUAUUCACUUUAUGUACAAAAAGCUCCUGCAGCCGAGCAAAGUGAAUCCCUGAAUGGAAA--AC
-----...(((((((...)))))))...((((.(((.(((((((((...........((((........)))))))))))))...))).))))..--.. ( -24.10)
>DroEre_CAF1 49407 92 + 1
-----UACCUGAUGCCGAGCAUCAGAAAUCCAAUUAUAUUCACUUUAUGUACAAAAAGCUCCUGCAGCCGGGCAAAGUGAAUCCCUGAAUGGGGA--AC
-----...(((((((...))))))).............((((((((...........((....)).((...))))))))))(((((....)))))--.. ( -24.80)
>DroYak_CAF1 49077 94 + 1
-----UACCUGAUGCCGAGCAUCAGAAAUCCAAUUAUAUUCACUUUACGUACAAAAAGCUCCUGCAGCCGGGCAAAGUGAAUCCCUGAAUGGGGAAAAC
-----...(((((((...))))))).............((((((((...........((....)).((...))))))))))(((((....))))).... ( -24.80)
>DroAna_CAF1 47939 86 + 1
UCAUCCACUUGACGCAGGGCAUCAGAAAUCCAAUUAUAUUCACUUUGUGUACAAAAAGCC---------CGGGAAAGCGAAUCCGUGAAAGGUGG----
....((((((..(((.((((....(((...........)))..((((....))))..)))---------).(((.......))))))..))))))---- ( -21.10)
>consensus
_____UACCUGAUGCCGAGCAUCAGAAAUCCAAUUAUAUUCACUUUAUGUACAAAAAGCUCCUGCAGCCGAGCAAAGUGAAUCCCUGAAUGGGGA__AC
........(((((((...)))))))...((((.(((.(((((((((...........((((........)))))))))))))...))).))))...... (-19.44 = -19.75 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:03 2006