Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,013,577 – 14,013,697 |
Length | 120 |
Max. P | 0.999949 |
Location | 14,013,577 – 14,013,697 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -38.74 |
Consensus MFE | -37.34 |
Energy contribution | -37.94 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -3.10 |
Structure conservation index | 0.96 |
SVM decision value | 4.78 |
SVM RNA-class probability | 0.999949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14013577 120 + 20766785 GAGCCUCUUUGGCGCCCGACGAGGUGACAAUUCCAUUUAAGAAUUGCGGGCAUAGCUUUGUUAUUGCCCAUGACCAUUCUAGCCAACCAUUCCGGCUAACAAUGGAAUAGUUAUCUCUUC ..(((.....)))....((.((((((((.((((((((..........(((((((((...)))).)))))..........(((((.........)))))..)))))))).)))))))).)) ( -40.20) >DroSec_CAF1 44266 120 + 1 GAGCCUCUUUGGCGCCCGACGAGGUGUCAAUUCCAUUUAAGAAUUGCGGGCAUAGCUUUGUUAUUGCCCAUGACCAUUCUAGCCAACCAUUCCGGCUAACAAUGGAAUAGUUAUCUCUUC ..(((.....)))....((.((((((.(.((((((((..........(((((((((...)))).)))))..........(((((.........)))))..)))))))).).)))))).)) ( -35.60) >DroSim_CAF1 43676 120 + 1 GAGCCUCUUUGGCGCCCGACGAGGUGACAAUUCCAUUUAAGAAUUGCGGGCAUAGCUUUGUUAUUGCCCAUGACCAUUCUAGCCAACCAUUCCGGCUAACAAUGGAAUAGUUAUCUCUUC ..(((.....)))....((.((((((((.((((((((..........(((((((((...)))).)))))..........(((((.........)))))..)))))))).)))))))).)) ( -40.20) >DroEre_CAF1 44774 120 + 1 CAGCCUCUUUGGCGCCCGACGAGGUGACAAUUCCAUUUAAGAAUUGCGGGCAUAGCUUUGUUAUGGCCCAUGACCAUUCUAGCCCUCCAUUCCGGCUAACAAUGGCAUAGUUAUCUCUUC ..(((.....)))....((.(((((((((((((.......)))))..(((((((((...))))).))))(((.(((((.(((((.........)))))..)))))))).)))))))).)) ( -38.00) >DroYak_CAF1 44480 120 + 1 GAGCCUCUUUGGCGCCCGACGAGGUGACUAUUCCAUUUAAGAAUUGCGGGCAUAGCUUUGUUAUUGCCCAUGACCAUUCUAGCCCACCAUUCCGGCUAACAAUGGCAUAGUUAUCUCUUC ..(((.....)))....((.(((((((((((.(((((..........(((((((((...)))).)))))..........(((((.........)))))..))))).))))))))))).)) ( -39.70) >consensus GAGCCUCUUUGGCGCCCGACGAGGUGACAAUUCCAUUUAAGAAUUGCGGGCAUAGCUUUGUUAUUGCCCAUGACCAUUCUAGCCAACCAUUCCGGCUAACAAUGGAAUAGUUAUCUCUUC ..(((.....)))....((.((((((((.((((((((..........(((((((((...))))).))))..........(((((.........)))))..)))))))).)))))))).)) (-37.34 = -37.94 + 0.60)
Location | 14,013,577 – 14,013,697 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -36.62 |
Consensus MFE | -32.04 |
Energy contribution | -33.04 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.87 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14013577 120 - 20766785 GAAGAGAUAACUAUUCCAUUGUUAGCCGGAAUGGUUGGCUAGAAUGGUCAUGGGCAAUAACAAAGCUAUGCCCGCAAUUCUUAAAUGGAAUUGUCACCUCGUCGGGCGCCAAAGAGGCUC .......((((((((((..........))))))))))(((.((..(((...(((((............)))))((((((((.....)))))))).)))...)).)))(((.....))).. ( -37.20) >DroSec_CAF1 44266 120 - 1 GAAGAGAUAACUAUUCCAUUGUUAGCCGGAAUGGUUGGCUAGAAUGGUCAUGGGCAAUAACAAAGCUAUGCCCGCAAUUCUUAAAUGGAAUUGACACCUCGUCGGGCGCCAAAGAGGCUC .......((((((((((..........))))))))))(((.((..(((...(((((............)))))((((((((.....))))))).))))...)).)))(((.....))).. ( -36.40) >DroSim_CAF1 43676 120 - 1 GAAGAGAUAACUAUUCCAUUGUUAGCCGGAAUGGUUGGCUAGAAUGGUCAUGGGCAAUAACAAAGCUAUGCCCGCAAUUCUUAAAUGGAAUUGUCACCUCGUCGGGCGCCAAAGAGGCUC .......((((((((((..........))))))))))(((.((..(((...(((((............)))))((((((((.....)))))))).)))...)).)))(((.....))).. ( -37.20) >DroEre_CAF1 44774 120 - 1 GAAGAGAUAACUAUGCCAUUGUUAGCCGGAAUGGAGGGCUAGAAUGGUCAUGGGCCAUAACAAAGCUAUGCCCGCAAUUCUUAAAUGGAAUUGUCACCUCGUCGGGCGCCAAAGAGGCUG .......((((.........))))(((.((..((.(((((((.(((((.....))))).......))).))))((((((((.....))))))))..))...)).)))(((.....))).. ( -37.10) >DroYak_CAF1 44480 120 - 1 GAAGAGAUAACUAUGCCAUUGUUAGCCGGAAUGGUGGGCUAGAAUGGUCAUGGGCAAUAACAAAGCUAUGCCCGCAAUUCUUAAAUGGAAUAGUCACCUCGUCGGGCGCCAAAGAGGCUC ((.(((...(((((.(((((.......(((((.((((((....(((((..((........))..))))))))))).)))))..))))).)))))...))).))....(((.....))).. ( -35.20) >consensus GAAGAGAUAACUAUUCCAUUGUUAGCCGGAAUGGUUGGCUAGAAUGGUCAUGGGCAAUAACAAAGCUAUGCCCGCAAUUCUUAAAUGGAAUUGUCACCUCGUCGGGCGCCAAAGAGGCUC ((.(((.........(((((.((((((((.....)))))))))))))....((((.(((.......)))))))((((((((.....))))))))...))).))....(((.....))).. (-32.04 = -33.04 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:02 2006