Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,472,742 – 2,472,833 |
Length | 91 |
Max. P | 0.877881 |
Location | 2,472,742 – 2,472,833 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 77.16 |
Mean single sequence MFE | -25.76 |
Consensus MFE | -12.12 |
Energy contribution | -12.60 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.11 |
Mean z-score | -2.12 |
Structure conservation index | 0.47 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2472742 91 - 20766785 GACAGCAUUUA-----GCCCCUGUGUUUGCUAAAAGGUUAUAGUAGUAAGCCGAAAGGCAGAAGGCUGUGCUACUGCACAC------ACAGGCACUAAAAUU .......((((-----(..(((((((.(((.....(((.(((((..(..(((....)))..)..))))))))...))).))------)))))..)))))... ( -32.90) >DroSec_CAF1 26966 99 - 1 GACAGCAUUUACCCCUGCCCCCUUGUUUGCUAAAAGGUUAUAG---UAAGUCGAAAGGCAGAAGGCUGUGCUACUGCACACGGAGGCACAGACACUAAAAUU ..............(((((...((((((((((........)))---)))).)))..))))).((.(((((((.(((....))).)))))))...))...... ( -27.80) >DroSim_CAF1 27281 99 - 1 GACAGCAUUUACCCCUGCCCCCUUGUUUGCUAAAAGGUUAUAG---UAAGUCGAAAGGCAGAAGACUGUGCUACUGCACACGGAGGCACAGACACUAAAAUU ..............(((((...((((((((((........)))---)))).)))..)))))....(((((((.(((....))).)))))))........... ( -27.30) >DroEre_CAF1 25980 79 - 1 GACAGCAUUUACC-----CCCGGUGUUUGCUAAAAGGUU--------AAGUCGAAAGGCAGAAGGCUGUGCAG----------UAGCACAGACACUAAAAUU ...((((..((((-----...))))..))))........--------..(((....)))...((.((((((..----------..))))))...))...... ( -23.70) >DroYak_CAF1 25955 79 - 1 GACCGCAUUUACC-----CCCGAUGUUUGCUAAAAGGUU--------AAGUCUAAAGGUAGAAGGCUGUGCAG----------UAGCACAAGCACUAAAAUU .......((((((-----...(((....(((....))).--------..)))....))))))(((((((((..----------..)))).))).))...... ( -17.10) >consensus GACAGCAUUUACC___GCCCCCGUGUUUGCUAAAAGGUUAUAG___UAAGUCGAAAGGCAGAAGGCUGUGCUACUGCACAC__AAGCACAGACACUAAAAUU ...((((..((............))..))))....(((...........(((....)))....(.((((((..............)))))).))))...... (-12.12 = -12.60 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:18 2006