Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,957,460 – 13,957,562 |
Length | 102 |
Max. P | 0.584031 |
Location | 13,957,460 – 13,957,562 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 88.08 |
Mean single sequence MFE | -15.52 |
Consensus MFE | -12.20 |
Energy contribution | -12.16 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -1.50 |
Structure conservation index | 0.79 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13957460 102 - 20766785 UACUCUACUA-UUCACUGCUCUC-------UUUCGAGAUCUCCGCGAUCAGCUGUGCCUGAUUUCUCUGCUCAUUUCACCAUUCAAUUGUGUUUUCUACUUG-AGCACAAA ..........-......((((((-------....)))).....(.((((((......)))))).)...))................((((((((.......)-))))))). ( -16.00) >DroSec_CAF1 11358 100 - 1 UACUUUACUAAUUCAC---UCUC-------UUUCGAGAUCUCCGCGAUCAGCUGUGCCUGAUUUCUCUGCUCAUUUCACCAUUCAAUUGUGUUUUCUACUUA-AGCACAAA ................---....-------....((((((..((((......))))...)))))).....................((((((((.......)-))))))). ( -14.90) >DroSim_CAF1 11315 100 - 1 UACUCUACUAAUUCAC---UCUC-------UUUCGAGAUCUCCGCGAUCAGCUGUGACUGAUUUCUCUGCUCAUUUCACCAUUCAAUUGUGUUUUCUACUUA-AGCACAAA ................---....-------....((((((..((((......))))...)))))).....................((((((((.......)-))))))). ( -14.90) >DroEre_CAF1 11111 93 - 1 ------A-UUAGUCAC---UCUC-------UUUCGAGAUCUCCACGAUCAGCUGUGCCUGAUUUCUCUGCUCAUUUCACCAUUCAAUUGUGUUUUCUACUUA-AGCACAAA ------.-........---....-------....((((((..((((......))))...)))))).....................((((((((.......)-))))))). ( -15.30) >DroYak_CAF1 11779 104 - 1 ----CAACUAAUUCAC---GCUCAUUCGUCUGUCGAGAUAUCCACGAUCAGCUGUGCCUGAUUUCUCUGCUCAUUUCACCAUUCAAUUGUGUUUUCUACUUAAAGCACAAA ----............---............((.((((.(((((((......))))...))).)))).))................(((((((((......))))))))). ( -16.50) >consensus UACUCUACUAAUUCAC___UCUC_______UUUCGAGAUCUCCGCGAUCAGCUGUGCCUGAUUUCUCUGCUCAUUUCACCAUUCAAUUGUGUUUUCUACUUA_AGCACAAA ..................................((((((..((((......))))...)))))).....................(((((((..........))))))). (-12.20 = -12.16 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:52 2006