Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,937,641 – 13,937,750 |
Length | 109 |
Max. P | 0.942769 |
Location | 13,937,641 – 13,937,750 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 73.94 |
Mean single sequence MFE | -33.13 |
Consensus MFE | -16.86 |
Energy contribution | -18.76 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.10 |
Mean z-score | -2.57 |
Structure conservation index | 0.51 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13937641 109 - 20766785 GGCUCCGCUUGUU---GAUGAUUCGUGUCAGCACGA-AGACGAGAAAUGCCAC--AAGAAGAGCGCUAAACAAAAGGGGCAGCAACAGGCAGCAGCAGCAGUAGCAACCAGCAAG .(((..(((((((---(....((((((....)))))-)...............--.......((.((........)).))..)))))))).((.((....)).))....)))... ( -28.40) >DroPse_CAF1 7012 100 - 1 GGCUUUGUCUGCUUGUGGCGUUUCGUGUCAGCACGAAAGACAA-----GCCACAGAAAAAGAGCGCAAAGGCAAAGUAGGAACAACA-------GCAGC---AGCCACAAGCCAC (((((((.(((((((((((.(((((((....))))))).....-----))))))........((((....))...((....))....-------)))))---)).)).))))).. ( -35.50) >DroPer_CAF1 7053 100 - 1 GGCUUUGUCUGCUUGUGGCGUUUCGUGUCAGCACGAAAGACAA-----GCCACAGAAAAAGAGCGCAAAGGCAAAGUAGGAACAACA-------GCAGC---AGCCACAAGCCAC (((((((.(((((((((((.(((((((....))))))).....-----))))))........((((....))...((....))....-------)))))---)).)).))))).. ( -35.50) >consensus GGCUUUGUCUGCUUGUGGCGUUUCGUGUCAGCACGAAAGACAA_____GCCACAGAAAAAGAGCGCAAAGGCAAAGUAGGAACAACA_______GCAGC___AGCCACAAGCCAC ..........(((((((((.(((((((....)))))))........................((((............................)).))....)))))))))... (-16.86 = -18.76 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:51 2006