| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,909,849 – 13,909,969 |
| Length | 120 |
| Max. P | 0.768880 |
| Location | 13,909,849 – 13,909,969 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.39 |
| Mean single sequence MFE | -48.15 |
| Consensus MFE | -32.00 |
| Energy contribution | -32.12 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.768880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13909849 120 + 20766785 GGAGAAUGGCCUAUGGGUGGGCUACGAGGAUCCCUUGACGGCGGCCAUUAAGGCCGGAUUUGUGCAUGCCCAAGGAUUGGGCGGAGUGGCCUUCCACGACCUGUCCAUGGAUGAUUUUCG .((((((.(.(((((((..(((..(((((...)))))..((.(((((((...(((.((((..((......))..)))).)))..)))))))..))..).))..))))))).).)))))). ( -48.90) >DroVir_CAF1 244927 120 + 1 CGAGAACGGCCUCUGGGUAGGCUACGAGGAUCCCACAACGGCGGCCAUUAAGGCCGGCUUUGUGCAGGCCCAGGGCUUGGGCGGUGUUGCCUUCCAUGAUCUGUCACUAGAUGAUUUUCG ((((((.((((.((((((..((.((((((...((.....))(((((.....))))).))))))))..))))))))))((((.((.....)).))))(.(((((....))))).))))))) ( -48.20) >DroGri_CAF1 243563 120 + 1 UGAGUCCGGUGUCUGGGUAGGUUACGAGGAUCCUACAACGGCGGCUAUUAAGGCCAGCUAUGUUCAGGCUAAGAACUUGGGUGGCGUAGCCUUCCAUGAUCUGUCGCUGGAUGAUUUUCG ...((((((((.(.(((((((..........)))))...((.((((((....((((.(((.((((.......)))).))).))))))))))..))....)).).))))))))........ ( -41.80) >DroWil_CAF1 257069 120 + 1 AGCGAAUGGUUUGUGGGUGGGCUACGAAGAUCCCACAACGGCUGCCAUCAAGGCAGGCUAUGCCCAGGCAUUGGGCUUGGGUGGAGUAGCCCUCCACGACUUGUCUCUCGACGAUUUUCG ..((((....(((((((.(((((((.....(((......(.(((((.....))))).)...((((((((.....))))))))))))))))))))))))).(((((....)))))..)))) ( -52.10) >DroMoj_CAF1 272625 120 + 1 CGAGAACGGCAUCUGGGUGGGCUACGAGGAUCCCACCACGGCGGCGAUAAAGGCUGAUUUCGUCCGAGCUCAGGGCUUGGGCGGUGUGGCCCUCCACGAUCUGUCCCUAGAUGAUUUCAG .((((....((((((((.((((((((...(((((.(....).)).)))...........((((((((((.....)))))))))))))))))).....((....)))))))))).)))).. ( -46.60) >DroAna_CAF1 201648 120 + 1 CGAGAAUGGUUUGUGGAUCGGCUACGAGGAUCCCACAACGGCGGCCAUUAAGGCGGGAUACGUCCAGUCCCAGGGAUUGGGGGGAGUGGCCUUCCACGACCUAUCCAUGGAUGAUUUUCG (((((((((((.(((((..((((((....(((((.(......)(((.....)))))))).(.((((((((...)))))))).)..)))))).)))))))))((((....))))))))))) ( -51.30) >consensus CGAGAACGGCCUCUGGGUGGGCUACGAGGAUCCCACAACGGCGGCCAUUAAGGCCGGCUAUGUCCAGGCCCAGGGCUUGGGCGGAGUGGCCUUCCACGACCUGUCCCUGGAUGAUUUUCG .(((((.......((((.(((((((................(((((.....)))))....(((((((((.....)))))))))..)))))))))))......(((....)))..))))). (-32.00 = -32.12 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:48 2006