| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,906,138 – 13,906,230 |
| Length | 92 |
| Max. P | 0.940493 |
| Location | 13,906,138 – 13,906,230 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 75.42 |
| Mean single sequence MFE | -21.66 |
| Consensus MFE | -13.64 |
| Energy contribution | -13.28 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940493 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13906138 92 - 20766785 GACUGGUGGUU-UUUAAUGCUUCAUUGGCUUAAUUGCCAGCCAUGUGCAAAAACAAGUACAUUGUGAAAAAAAACAAUGUUUAUUGCAAUGAA------- .(((((((((.-.((((.(((.....)))))))..)))).))).))((((.((.....(((((((........))))))))).))))......------- ( -22.80) >DroSec_CAF1 192134 87 - 1 GACUGGUGGUU-UUUAAUGCUUCAUUGGCUUAAUUGCCAGCCAUGUGCAAAAACAAGUACACUGUGAAAA-A--CAAUGUU--UUCAAAUGAA------- ...(((((((.-.((((.(((.....)))))))..)))).)))(((((........)))))...((((((-.--.....))--))))......------- ( -19.80) >DroSim_CAF1 195623 91 - 1 GACUGGUGGUU-UUUAAUGCUUCAUUGGCUUAAUUGCCAGCCAUGUGCAAAAACAAGUACACUGUGAAAA-AAGCAAUGUAUAUUGCAAUGAA------- ...(((((((.-.((((.(((.....)))))))..)))).)))(((((........))))).........-..(((((....)))))......------- ( -21.20) >DroYak_CAF1 204261 98 - 1 GACUGGUGGUUUUUUAAUGCUUCAUUGGCUUAAUUGCCAGUCAUGUGCAAACACACGUACACUGUAAAAAAAACCAUUGUG--UUAAAAUUAAGUAAAUA (((((((((((((((..(((...((((((......))))))..(((((........)))))..))).)))))))))))).)--))............... ( -23.20) >DroAna_CAF1 197467 92 - 1 GGAUGG-GGUU-UUUAAUGCUUCAUUGGCUUAAUUGCCCAACAUGUGCGCCAUUUCGUACACCUCACAAAUUUU--AUAGG--UCUAAUGGCAUUUAU-- ((...(-(((.-.((((.(((.....)))))))..))))....((((((......))))))))...........--....(--((....)))......-- ( -21.30) >consensus GACUGGUGGUU_UUUAAUGCUUCAUUGGCUUAAUUGCCAGCCAUGUGCAAAAACAAGUACACUGUGAAAA_AA_CAAUGUG__UUGAAAUGAA_______ .(((((((((...((((.(((.....)))))))..)))).)))(((((........)))))..))................................... (-13.64 = -13.28 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:46 2006