Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,472,447 – 2,472,569 |
Length | 122 |
Max. P | 0.868180 |
Location | 2,472,447 – 2,472,543 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 71.33 |
Mean single sequence MFE | -26.45 |
Consensus MFE | -14.03 |
Energy contribution | -14.42 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.19 |
Mean z-score | -1.46 |
Structure conservation index | 0.53 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2472447 96 - 20766785 UUUUCCUAACGGGAAACCCGCAGAUAGCCGGCAACUAAAUGCGGCUAAUUCGCGCUUGGCUUAGACGCUCCAAAGUUU--AUUCACGCAUGUGGAAGG---------- ((((((....)))))).(((((..((((((.((......))))))))....(((..(((..(((((........))))--).)))))).)))))....---------- ( -29.40) >DroVir_CAF1 29468 93 - 1 AUCUACUAACGGCAU--UCGCAACUAGCU-GCAAUUAAAUGCGGCUAAUUUC-AAUUAGAUU-------GCAAAGUCACAGU----CCGAGUCCAAAGUUUACCAGCU ..........((.((--(((....(((((-(((......)))))))).....-.....((((-------(........))))----)))))))).............. ( -20.90) >DroSec_CAF1 26670 96 - 1 UUUUCCUAACGGGAUGUCCGCAGAUAGCCGGCAACUAAAUGCGGCUAAUUCGCGCUUGGCUUAGACGCUCCAAAGUUU--AUUCACGCAUGUGGAAGG---------- ..((((....))))..((((((..((((((.((......))))))))....(((..(((..(((((........))))--).)))))).))))))...---------- ( -29.40) >DroSim_CAF1 26985 96 - 1 UUUUCCUAACGGGAUGCCCGCAGAUAGCCGGCAACUAAAUGCGGCUAAUUCGCGCUUGGCUUAGACGCUCCAAAGUUU--AUUCACGCAUGUGGAAGG---------- ..((((....))))...(((((..((((((.((......))))))))....(((..(((..(((((........))))--).)))))).)))))....---------- ( -27.90) >DroEre_CAF1 25718 76 - 1 UUUUCCUAACGGGAUACCCGCAGUUAGCCGGCAACUAAAUGCGGCUAAUUCCCAAG-------------------UUU--AUCCACGCAUGUGGAC-U---------- ..........((((...(((((.((((.......)))).))))).....))))...-------------------...--.(((((....))))).-.---------- ( -22.50) >DroYak_CAF1 25668 96 - 1 UUUUCCUAACGGGAUGCCCGCAGAUAGCCGGCAAAUAAACGCGGCUAAUUCCCAAGUUGCUGAGACGCCCCAAUGUUU--AUCCACGCAUGUGGAUGA---------- ..........(((.((((.((.....)).)))).......((((((........))))))........))).....((--((((((....))))))))---------- ( -28.60) >consensus UUUUCCUAACGGGAUGCCCGCAGAUAGCCGGCAACUAAAUGCGGCUAAUUCCCAAUUGGCUUAGACGCUCCAAAGUUU__AUUCACGCAUGUGGAAGG__________ .........(((.....)))....(((((.(((......))))))))..................................(((((....)))))............. (-14.03 = -14.42 + 0.39)
Location | 2,472,465 – 2,472,569 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 74.79 |
Mean single sequence MFE | -25.77 |
Consensus MFE | -13.99 |
Energy contribution | -16.05 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.10 |
Mean z-score | -1.86 |
Structure conservation index | 0.54 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2472465 104 + 20766785 -AAACUUUGGAGCGUCUAAGCCAAGCGCGAAUUAGCCGCAUUUAGUUGCCGGCUAUCUGCGGGUUUCCCGUUAGGAAAAACAAUUUCAGAAAUGAAAUUAGCAAA -.......((((((.((......)))))....((((((((......)).)))))))))(((..(((((.....)))))..)(((((((....))))))).))... ( -30.30) >DroVir_CAF1 29493 83 + 1 GUGACUUUGC-------AAUCUAAUU-GAAAUUAGCCGCAUUUAAUUGC-AGCUAGUUGCGA--AUGCCGUUAGUAGAUAUU---UU----AUUUAAU----AUU .(((((((((-------..((.....-))(((((((.(((......)))-.)))))))))))--)....))))...((((((---..----....)))----))) ( -16.30) >DroSec_CAF1 26688 104 + 1 -AAACUUUGGAGCGUCUAAGCCAAGCGCGAAUUAGCCGCAUUUAGUUGCCGGCUAUCUGCGGACAUCCCGUUAGGAAAAAAAAUUUCAGAAAUGAAAUUAGCAAA -..........((((((..((...))(((...((((((((......)).))))))..))))))).(((.....))).....(((((((....))))))).))... ( -28.10) >DroSim_CAF1 27003 104 + 1 -AAACUUUGGAGCGUCUAAGCCAAGCGCGAAUUAGCCGCAUUUAGUUGCCGGCUAUCUGCGGGCAUCCCGUUAGGAAAAACAAUUUCAGAAAUGAAAUUAGCAAA -..........((((.....((.((((((...((((((((......)).))))))..)))(((...)))))).))....))(((((((....))))))).))... ( -29.90) >DroEre_CAF1 25735 84 + 1 -AAA-------------------CUUGGGAAUUAGCCGCAUUUAGUUGCCGGCUAACUGCGGGUAUCCCGUUAGGAAAAACUAUUUCAGA-AUGAAAUUAGCAAA -...-------------------...((((..((.(((((.(((((.....))))).))))).))))))((((.........(((((...-..)))))))))... ( -22.60) >DroYak_CAF1 25686 103 + 1 -AAACAUUGGGGCGUCUCAGCAACUUGGGAAUUAGCCGCGUUUAUUUGCCGGCUAUCUGCGGGCAUCCCGUUAGGAAAAACUAUUUCAGA-AUGAAAUUAGCAAA -.......(.(((.((((((....))))))....))).)(((.(((((((.((.....)).)))....((((..((((.....))))..)-))))))).)))... ( -27.40) >consensus _AAACUUUGGAGCGUCUAAGCCAAGCGCGAAUUAGCCGCAUUUAGUUGCCGGCUAUCUGCGGGCAUCCCGUUAGGAAAAACAAUUUCAGA_AUGAAAUUAGCAAA ................................((((((((......))).))))).((((((.....))).)))........((((((....))))))....... (-13.99 = -16.05 + 2.06)
Location | 2,472,465 – 2,472,569 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 74.79 |
Mean single sequence MFE | -23.57 |
Consensus MFE | -12.87 |
Energy contribution | -15.23 |
Covariance contribution | 2.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.68 |
Structure conservation index | 0.55 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2472465 104 - 20766785 UUUGCUAAUUUCAUUUCUGAAAUUGUUUUUCCUAACGGGAAACCCGCAGAUAGCCGGCAACUAAAUGCGGCUAAUUCGCGCUUGGCUUAGACGCUCCAAAGUUU- (((((((((((((....)))))))).((((((....))))))...)))))((((((.((......))))))))....(((((......)).)))..........- ( -28.60) >DroVir_CAF1 29493 83 - 1 AAU----AUUAAAU----AA---AAUAUCUACUAACGGCAU--UCGCAACUAGCU-GCAAUUAAAUGCGGCUAAUUUC-AAUUAGAUU-------GCAAAGUCAC ...----.......----..---.............(((.(--(.((((.(((((-(((......))))))))...((-.....))))-------)).))))).. ( -15.90) >DroSec_CAF1 26688 104 - 1 UUUGCUAAUUUCAUUUCUGAAAUUUUUUUUCCUAACGGGAUGUCCGCAGAUAGCCGGCAACUAAAUGCGGCUAAUUCGCGCUUGGCUUAGACGCUCCAAAGUUU- (((((.(((((((....)))))))....((((....)))).....)))))((((((.((......))))))))....(((((......)).)))..........- ( -25.50) >DroSim_CAF1 27003 104 - 1 UUUGCUAAUUUCAUUUCUGAAAUUGUUUUUCCUAACGGGAUGCCCGCAGAUAGCCGGCAACUAAAUGCGGCUAAUUCGCGCUUGGCUUAGACGCUCCAAAGUUU- ...((.(((((((....)))))))((((((((....)))).((((((..(((((((.((......))))))).))..)))...)))..))))))..........- ( -27.40) >DroEre_CAF1 25735 84 - 1 UUUGCUAAUUUCAU-UCUGAAAUAGUUUUUCCUAACGGGAUACCCGCAGUUAGCCGGCAACUAAAUGCGGCUAAUUCCCAAG-------------------UUU- ..(((..(((((..-...))))).((..((((....)))).))..)))((((((((.((......)))))))))).......-------------------...- ( -20.60) >DroYak_CAF1 25686 103 - 1 UUUGCUAAUUUCAU-UCUGAAAUAGUUUUUCCUAACGGGAUGCCCGCAGAUAGCCGGCAAAUAAACGCGGCUAAUUCCCAAGUUGCUGAGACGCCCCAAUGUUU- ...((((.((((..-...))))))))..........(((.((((.((.....)).)))).......((((((........))))))........))).......- ( -23.40) >consensus UUUGCUAAUUUCAU_UCUGAAAUAGUUUUUCCUAACGGGAUGCCCGCAGAUAGCCGGCAACUAAAUGCGGCUAAUUCCCAAUUGGCUUAGACGCUCCAAAGUUU_ (((((..((((((....)))))).....((((....)))).....)))))(((((.(((......))))))))................................ (-12.87 = -15.23 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:17 2006