Locus 4229

Sequence ID 2R_DroMel_CAF1
Location 13,900,133 – 13,900,226
Length 93
Max. P 0.766459
window6790

overview

Window 0

Location 13,900,133 – 13,900,226
Length 93
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 76.30
Mean single sequence MFE -39.37
Consensus MFE -25.41
Energy contribution -26.72
Covariance contribution 1.31
Combinations/Pair 1.43
Mean z-score -1.42
Structure conservation index 0.65
SVM decision value 0.52
SVM RNA-class probability 0.766459
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13900133 93 + 20766785
GUCACCGGUCAGGUCA---UCAUCAUCAUCGUCAUCCCAUGAUGGGCGACCGCGGGCUGGAGAUGAUCUCGAGCUUGGCCGGGCUGUCGUCCUACC
....((((((((((..---((...((((((..((.(((....(((....))).))).))..))))))...)))))))))))).............. ( -35.00)
>DroSec_CAF1 186061 96 + 1
GCCACCGGCCAGGUCAGCAUCAUCCUCAUCGUCAUCCCAUGAUGGGCGACCGCGGGAUGGAGAUGAUCUCGAGCUGGGCCUGGCUGUGGUCCUGCC
(((((.((((((((((((.((....(((((..((((((....(((....))).))))))..)))))....))))).))))))))))))))...... ( -49.60)
>DroSim_CAF1 189174 96 + 1
GCCACCGGCCAGGUCAGCAUCAUCAUCAUCGUCAUCCCAUGAUGGGCGACCGCGGGAUGGAGAUGAUCUCGAGCUGGGCCUGGCUGUGGUCCUACC
(((((.((((((((((((.((...((((((..((((((....(((....))).))))))..))))))...))))).))))))))))))))...... ( -51.00)
>DroEre_CAF1 186226 93 + 1
GCCGCCGGCCAGAUCA---UCAUCAUCAUCCUCUUCCCAGGACGAGCGACCGCGGGCUGGAGGUGACCUGGAACUGGGCUUGGCUGUGGUCCUUCC
(((((.((((((..(.---((....(((.(((((.(((.((.(....).))..)))..))))))))....))....)..)))))))))))...... ( -32.40)
>DroYak_CAF1 198337 93 + 1
GCCGCCGGCAAGGUCA---UCAUCAUCAUCGUCAUCCCAUGAUGGACGACUGUGGGAUGGAGGUGCUUUGGAGCUGGACUUGGCUGUGGUCCUACC
(((((.(.((((..((---.(..((.((((..((((((((...........))))))))..))))...))..).))..)))).).)))))...... ( -34.60)
>DroPer_CAF1 179323 90 + 1
GUCACCAGCCGAA------UCGUCGUCAUCCUCAUCUGAUGCUUGGUGGCGGCGCCCCGGAGCGGUCUUUGGCUUGGGCUUGGCCGUCGUCUGGCG
....(((((((..------.((((((((((..(((...)))...))))))))))...))).((((((...(((....))).))))))...)))).. ( -33.60)
>consensus
GCCACCGGCCAGGUCA___UCAUCAUCAUCGUCAUCCCAUGAUGGGCGACCGCGGGAUGGAGAUGAUCUCGAGCUGGGCCUGGCUGUGGUCCUACC
(((((.(((((((((....((...((((((..((.(((....(((....))).))).))..))))))...))....))))))))))))))...... (-25.41 = -26.72 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:45 2006