| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,899,524 – 13,899,644 |
| Length | 120 |
| Max. P | 0.600314 |
| Location | 13,899,524 – 13,899,644 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.27 |
| Mean single sequence MFE | -26.28 |
| Consensus MFE | -17.68 |
| Energy contribution | -18.96 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.600314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13899524 120 - 20766785 UGGAUCGGGUGACAACGGAAUAGCUGUUGAAUAAGAUGAUUAUUUACUUAAGUAAUCAACUAAUUAAUCUUUGUAGGUUCUACACACCAUUGGCCAAAGCCAGAAGACCAAGCACAAAGA (((.((.((((.((((((.....))))))(((.((.(((((((((....))))))))).)).)))......(((((...))))))))).(((((....)))))..))))).......... ( -30.80) >DroSec_CAF1 185467 116 - 1 UGGAUCGGGUGACAGCGGAACAGCUGUAAAAUAAGAUGAUUACUUACUUAAGGAAUCAACUAAUUAAUCUACUUA----AUACACACCAUUGGCCAAAGCCAGAACACCAAGCACAAAGA (((....(((((((((......)))))..(((.((.(((((.(((....))).))))).)).)))..........----.....)))).(((((....)))))....))).......... ( -26.70) >DroSim_CAF1 188576 116 - 1 AGGAUCGGGUGACAGCGGAACAGCUGCAAAAUAAGAUGAUUACUUACUUAAGGAAUCAACUAAUUAAUCUAAUUA----AUACACACCAUUGGCCAAAGCCAGAACACCAAGCACAAAGA .((....((((.((((......))))...(((.((.(((((.(((....))).))))).)).)))..........----.....)))).(((((....)))))....))........... ( -24.30) >DroEre_CAF1 185653 120 - 1 UGGAUCCGGUGACAGCGGCACAGCUUUAAAAUCAAAUGAUUACUUAUUAAAAGGAUCAACUAAUUGAUUUUUUAAGGUUCUACACACCUUUGGCCAACGCCAGUACACCGAGCACAAAUA ......((((((((((......)))....((((....))))........((((((((((....))))))))))(((((.......)))))((((....)))))).))))).......... ( -24.40) >DroYak_CAF1 197782 118 - 1 UGGAUCGGGUGACAGCGGAACAGCUUCAAAAU-AGAUGAUUGUUUAUUCACAGGAUCAACUAAUUCAUCU-UUGAGAUUCUACCCACCUUUGGCUAGAGACAGGACACCAAGCACAAGGA ......(((((..(((......)))((((...-((((((..(((.(((.....))).)))....))))))-)))).....)))))..((((((((.(.(........)).))).))))). ( -25.20) >consensus UGGAUCGGGUGACAGCGGAACAGCUGUAAAAUAAGAUGAUUACUUACUUAAGGAAUCAACUAAUUAAUCUAUUUAG_UUCUACACACCAUUGGCCAAAGCCAGAACACCAAGCACAAAGA .((....(((((((((......)))))..(((.((.(((((.(((....))).))))).)).)))...................)))).(((((....)))))....))........... (-17.68 = -18.96 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:44 2006