Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,899,330 – 13,899,444 |
Length | 114 |
Max. P | 0.945537 |
Location | 13,899,330 – 13,899,444 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.96 |
Mean single sequence MFE | -28.36 |
Consensus MFE | -10.77 |
Energy contribution | -11.05 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.14 |
Mean z-score | -2.29 |
Structure conservation index | 0.38 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13899330 114 + 20766785 CAGCAGCUAUCAAUCAAUCGCUCUCAUCUCAUAUGGCACUUGAUUCACUCCUA------GAUCCGACUAUCUGCUAUAUAAGAUCGGUUUCCCUUAAUCGAGAGCAUCAGUUGUAGUUGA ...((((((.((((..((.((((((((((.((((((((.(((..((.......------))..))).....)))))))).)))).((((......))))))))))))..)))))))))). ( -31.70) >DroSec_CAF1 185277 110 + 1 CAGCAGCUAUC----AAUCGCUCUCAUCUUAUAUUGCACUUGAUUCAUUUCGA------GAUCCGACUAUAUGCUAUAUAAGAUCGGGUUCCGUUAAUCGAGAGCAUCAGUUGUAGUUGA ...((((((.(----(((.(((((((((((((((.((((((((......))))------)...........))).)))))))))(((...)))......))))))....)))))))))). ( -32.20) >DroSim_CAF1 188386 110 + 1 CAGGUGCUAUC----AAUCGCUCUCAUCUCAUAUUGCACUUGAUUCAUUUCGA------GAUCCGACUAUAUGCUAUAUAAGAUCUGGUUCCGUUAAUCGAGAGCAUCAGUUGUAGCUGA (((.(((.((.----.((.((((((((((.((((.((((((((......))))------)...........))).)))).))))..((((.....))))))))))))..)).))).))). ( -26.40) >DroEre_CAF1 185469 106 + 1 ----G--UCAUUGUCAAU-GCUCUCAUCUCCUAUUUUACUUG-GUUACUCUGA------GAUCCGAUAAUCGGCUAUAUAAGAAAUGGUUCCGUAAAUCGAGAGCAUCAGUAGUAGAUGA ----(--(((((((..((-((((((.............((..-(.....)..)------)....(((...(((((((.......))))..)))...)))))))))))..))))).))).. ( -23.40) >DroYak_CAF1 197585 119 + 1 CAUAGUCUCUCAAUCAAU-GCUCUCAUUUCCUACUGCACUUGAGUCACUCCGAUUCUCCGAUUUUACUAUCGACUAUAUAAGAUCUGGUUCCGUAGAUCGAGAGCAUCAGUUAUAGAUGU ....((((...(((..((-((((((................(((((.....)))))..((((......)))).........((((((......))))))))))))))..)))..)))).. ( -28.10) >consensus CAGCAGCUAUC__UCAAUCGCUCUCAUCUCAUAUUGCACUUGAUUCACUCCGA______GAUCCGACUAUCUGCUAUAUAAGAUCUGGUUCCGUUAAUCGAGAGCAUCAGUUGUAGAUGA ...................((((((..................................((((..................)))).((((.....))))))))))............... (-10.77 = -11.05 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:43 2006