Locus 4226

Sequence ID 2R_DroMel_CAF1
Location 13,896,795 – 13,896,891
Length 96
Max. P 0.575535
window6787

overview

Window 7

Location 13,896,795 – 13,896,891
Length 96
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 70.58
Mean single sequence MFE -20.92
Consensus MFE -9.50
Energy contribution -9.82
Covariance contribution 0.32
Combinations/Pair 1.20
Mean z-score -1.68
Structure conservation index 0.45
SVM decision value 0.08
SVM RNA-class probability 0.575535
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13896795 96 + 20766785
UAUACCACUCAACUGAACGUUUGACUCAGAGGCAGUGCAUCUCAAAAGCAUCUCAAAAGCUUCAACUAAAUCAGCUU-AUUAUUUAAGUAGU----AUUCU-----------
.(((((((((..((((.........))))..).))))........((((.........))))...........((((-(.....))))).))----))...----------- ( -11.00)
>DroSec_CAF1 182538 85 + 1
UAUCCCACUCAACUGAGCAUUUGGCUCGGAGGCAGUGCAUCG-----------CAAAAGCUUCAGCCAAACCAGCUU-AUUAUUUAAGUAGU----AUACU-----------
.......(((....)))..(((((((..(((((..(((...)-----------))...))))))))))))...((((-(.....)))))...----.....----------- ( -20.50)
>DroSim_CAF1 185605 85 + 1
UAUUCCACUCGACUGAGCAUUUGGCUCGCUGGCAGUGCAGCU-----------CAAAAGCUUCAGCUAAACCAGCUU-AUUAUUUAAUAAGU----AUACU-----------
..........(.((((((.((((((((((.....))).))).-----------)))).)).))))).......((((-(((....)))))))----.....----------- ( -20.00)
>DroEre_CAF1 183283 100 + 1
UAUCCCACUCAACUGGGCGUGUGGCUCGGAUGCACUGCAGCU-----------CAAAAGCUUCUGCUA-GCCAGCUUUGCUUUUUAAGUAGUACGUGUACUUAAAUACAUGU
...((((......))))((((((....((.((((((((.(((-----------.((((((....(((.-...)))...))))))..))).))).)))))))....)))))). ( -27.00)
>DroYak_CAF1 192850 89 + 1
CAUCGCACUUAACUGAGCUUUUGGCUCGGUUGAAGUGCAGCU-----------CAAAAGCUUCUGCUA-ACCUGCUUCGCUAUUUUGUUAAUACAUCUACU-----------
....((((((((((((((.....))))))))).)))))(((.-----------.((.(((....((..-....))...))).))..)))............----------- ( -26.10)
>consensus
UAUCCCACUCAACUGAGCAUUUGGCUCGGAGGCAGUGCAGCU___________CAAAAGCUUCAGCUAAACCAGCUU_AUUAUUUAAGUAGU____AUACU___________
.....(((((..((((((.....))))))..).))))...................((((.............))))................................... ( -9.50 =  -9.82 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:42 2006