| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,889,740 – 13,889,831 |
| Length | 91 |
| Max. P | 0.731261 |
| Location | 13,889,740 – 13,889,831 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.36 |
| Mean single sequence MFE | -20.28 |
| Consensus MFE | -15.15 |
| Energy contribution | -15.48 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.731261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13889740 91 + 20766785 GAAU--------------------GCCGC-CCCCUGCUGCCACGCCUUGUCGACAGCUUUGUUUGUGUUGUAAAUAUAAUUUUACGACUCUGCCUCUGUCAGACUCGACUU--U ....--------------------((.((-.....)).))..((....((((((((....((..(.((((((((......)))))))).).))..))))).))).))....--. ( -19.50) >DroPse_CAF1 171973 72 + 1 ------------------------------------------CCCCUUGUCGACAGCUUUGUUUGUGUUGUAAAUAUAAUUUUACGACUCUGCCUCUGUCAGACUCGACUCCGG ------------------------------------------......((((((((....((..(.((((((((......)))))))).).))..))))).))).......... ( -16.90) >DroSim_CAF1 178585 91 + 1 GAAU--------------------GCCGC-CCCCCGCUGCCACGCCUUGUCGACAGCUUUGUUUGUGUUGUAAAUAUAAUUUUACGACUCUGCCUCUGUCAGACUCGACUU--U ....--------------------((.((-.....)).))..((....((((((((....((..(.((((((((......)))))))).).))..))))).))).))....--. ( -19.60) >DroYak_CAF1 181202 93 + 1 GAAC--------------------GCCGC-CCCCUGCUGCCACGCCUUGUCGACAGCUUUGUUUGUGUUGUAAAUAUAAUUUUACGACUCUGCCUCUGCCAGACUCGACUUCUC ....--------------------((.((-.....)).))........(((((.............((((((((......))))))))((((.......)))).)))))..... ( -17.40) >DroAna_CAF1 182043 112 + 1 CCACGCCCCUGUUGUCGUCCUUAUGCCGCCCCCCCGGUGCCACGCCUUGUCGACAGCUUUGUUUGUGUUGUAAAUAUAAUUUUACGACUCUGCCUCUGUCAGAGUCGGGAC--U ......(((.(((((((.(....((.((((.....)))).))......).)))))))............(((((......)))))((((((((....).))))))))))..--. ( -31.40) >DroPer_CAF1 169381 72 + 1 ------------------------------------------CCCCUUGUCGACAGCUUUGUUUGUGUUGUAAAUAUAAUUUUACGACUCUGCCUCUGUCAGACUCGACUCCGG ------------------------------------------......((((((((....((..(.((((((((......)))))))).).))..))))).))).......... ( -16.90) >consensus GAA_____________________GCCGC_CCCC_GCUGCCACGCCUUGUCGACAGCUUUGUUUGUGUUGUAAAUAUAAUUUUACGACUCUGCCUCUGUCAGACUCGACUC__U ................................................((((((((....((..(.((((((((......)))))))).).))..))))).))).......... (-15.15 = -15.48 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:41 2006