Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,857,960 – 13,858,052 |
Length | 92 |
Max. P | 0.565167 |
Location | 13,857,960 – 13,858,052 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 83.02 |
Mean single sequence MFE | -17.36 |
Consensus MFE | -11.58 |
Energy contribution | -11.34 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -1.70 |
Structure conservation index | 0.67 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13857960 92 + 20766785 AUUUAAUUAUGAAAGAAGCAUAAGUACAGUCUAAAUUUAUUUCAGUGUAAUGCUGAUGCAUAUCUGAAAGCAUAUUAAGACUCUGCAGCAAC ......(((((.......)))))(((.(((((.(((...((((((....((((....))))..))))))....))).))))).)))...... ( -20.30) >DroSec_CAF1 158169 81 + 1 AUUUAAUUAUGAAAUAAGCAU-----------AAAUUUAUUUCAGUGUAAUGCUGAUGCAUAUCUGAAAGCAUAUUAAGACUCUGCAGCAAC .................((..-----------.......((((((....((((....))))..))))))(((...........))).))... ( -12.70) >DroSim_CAF1 163395 92 + 1 AUUUAAUAAUGAAAGUAGCAUGAGUGCAGUCUAAAUUUAUUUCAGUGUAAUGCUGAUGCAUAUCUGAAAGCAUAUUAAGACUCUGCAGCAAC .................((.((...(.(((((.(((...((((((....((((....))))..))))))....))).))))))..))))... ( -19.00) >DroEre_CAF1 158929 85 + 1 AAGUGACUUUGAAAUAAGUAUA-------UCUGAAUUGUUUUCAGUGUAUUGCUGAUGCAUAUCUGAAAGCAUAUUAAGACUCUGCAGCAAC ..((.((((......))))...-------(((....(((((((((.((((.((....))))))))))))))).....))).......))... ( -17.00) >DroYak_CAF1 163622 80 + 1 AAGAGACUAUAAAAUAAGUAC------------AAUUGUUUUCAGUGUAAUGCUGAUGCAUAUCUGAAAGCAUAUUAAGACUCUGCAGCAAC .(((((((........)))..------------...(((((((((....((((....))))..)))))))))........))))........ ( -17.80) >consensus AUUUAAUUAUGAAAUAAGCAU________UCUAAAUUUAUUUCAGUGUAAUGCUGAUGCAUAUCUGAAAGCAUAUUAAGACUCUGCAGCAAC .................((....................((((((.(((.(((....))))))))))))(((...........))).))... (-11.58 = -11.34 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:30 2006