Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,857,007 – 13,857,127 |
Length | 120 |
Max. P | 0.977253 |
Location | 13,857,007 – 13,857,127 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.57 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -22.60 |
Energy contribution | -21.24 |
Covariance contribution | -1.36 |
Combinations/Pair | 1.27 |
Mean z-score | -2.29 |
Structure conservation index | 0.80 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977253 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13857007 120 - 20766785 UCCUACUCGAUAAGUUAUAUUACUUUAUGUGUUUAUCUGAGUGCAUUCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGACUUCGAUAGAAAUCAACCGAGUAAUUAAA ...((((((..((((......))))..((..((((((.((((.((((.((((((((((((............)))))))).)))).)))))))).))))))...))..))))))...... ( -29.50) >DroSec_CAF1 157196 120 - 1 GCCUACUCGAUAAGUUAUAUUGUUUUAUGUGUUUAUUUGAGUGCAUCCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGAAAUCACCCGAGUAAUUAAA ...((((((..((((((((.((.(((((...(((((((..((((......)))))))))))......))))).))..))))))))...(((((((....)))))))..))))))...... ( -28.90) >DroSim_CAF1 162486 120 - 1 GCCCACUCGAUAAGUUAUAUUGUUUUAUGUGUUUAUUUGAGUGCAUCCAGGCAUAAAUGGAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGAAAUCAGCCGGGUAAUUAAA ((((((((((.....(((((......))))).....)))))).......(((.......(((((((....((....)).)))))))..(((((((....))))))))))))))....... ( -32.30) >DroEre_CAF1 158024 117 - 1 GCACACUUGAUA-GUU--AUUGUUUUAUGUGUUUAUUUAAGUGUAUCCAAGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGGAAUCACCCAAGUAAUUAAA ..((((((((((-(.(--((........))).))).))))))))....((((((((((((............)))))))).))))...(((((((....))))))).............. ( -21.60) >DroYak_CAF1 162693 117 - 1 GCCUACUUGAUACGUU--AUGGUUUUAUGUGCUUAUUUAAGUGCAUCCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUGGCUUCAAUGAUUUCGAUAUGAAUCAGUCAAGUAAUUA-A ...((((((((.....--.(((....(((..(((....)))..))))))(.(((((((((............))))))))).).....((((((......))))))))))))))....-. ( -28.20) >consensus GCCUACUCGAUAAGUUAUAUUGUUUUAUGUGUUUAUUUGAGUGCAUCCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGAAAUCACCCGAGUAAUUAAA ....(((((.................(((..(((....)))..)))..((((((((((((............)))))))).))))...(((((((....)))))))..)))))....... (-22.60 = -21.24 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:29 2006